Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0916 ATGGCGGCAGCAGAAGAAGATTCCCCTGGAATTCGCGTCAGCGGGATGCAATTTTCCTATGAAGCTCAACAACCGCCGCTCTTCCTCGACTTCAACCTCAACGTCAAGCCTGGATCGCGGTGCCTCCTCGTCGGTGCCAACGGATCCGGTAAGACGACTTTGCTGAAGATTCTAGCGGGGAAGCATATGGTTGGAGGAAGAGATGTTGTGCGCGTGTTGAATGGTTCCGCTTTTCATGACACTCAACTCGTCTGTAGTGGAGATCTCGCTTATTTGGGCGGATCCTGGAGCAAAAACGTTGGCTCCGCTGGAGAAATTCCACTTCAAGGAGACTTCTCTGCCGAACATATGATCTTTGGAGTTGAGGGTGCTGACCCAGATAGGAGAGACAAGTTAATTGAGCTGCTTGATATCGATCTGCAGTGGCGAATGCACAAGGTATCTGATGGGCAGCGGCGTCGAGTGCAAATCTGTCTTGGCCTTCTTTATCCATATAAGGTTCTCTTGCTTGATGAGGTCACTGTTGATCTGGATGTTGTGACTCGGATGGATTTGTTGGAATTCTTCAGGGAAGAATGTGAACAGAGAGAAGCTACAATAGTATATGCAACTCATATTTTTGATGGACTAGAGGCATGGGCAACTCATTTGGCATATATACAAGATGGTGAACTGAGAAGAGCAGAAAAGATATCAGATGTCAATGAGTTGAAATCTTCCACTAATCTGCTATCTGTTGTTGAGACCTGGCTCCGTGCTGAAACAAAAGTTGTAAAGAAGAAACCTGTCCAAAAGAATTTTGCCAGTTCTCCATTCTTTTCATCCAGACACATGGCGTATTATCGATAG 849 0.4641 MAAAEEDSPGIRVSGMQFSYEAQQPPLFLDFNLNVKPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVRVLNGSAFHDTQLVCSGDLAYLGGSWSKNVGSAGEIPLQGDFSAEHMIFGVEGADPDRRDKLIELLDIDLQWRMHKVSDGQRRRVQICLGLLYPYKVLLLDEVTVDLDVVTRMDLLEFFREECEQREATIVYATHIFDGLEAWATHLAYIQDGELRRAEKISDVNELKSSTNLLSVVETWLRAETKVVKKKPVQKNFASSPFFSSRHMAYYR* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0916 282 SMART AAA_5 37 224 IPR003593 -
Vra8g0916 282 PANTHER ABC TRANSPORTER I FAMILY MEMBER 21 9 282 - -
Vra8g0916 282 Pfam ABC transporter 30 174 IPR003439 GO:0005524
Vra8g0916 282 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 11 247 IPR003439 GO:0005524
Vra8g0916 282 PANTHER ATP-BINDING CASSETTE ABC TRANSPORTER-RELATED 9 282 - -
Vra8g0916 282 Gene3D - 10 267 IPR027417 -
Vra8g0916 282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 236 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0916 Vra-Chr8 20329548 20332873 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0916 11 239 Calmodulin-binding Proteins AT2G36910 23.237 4.04e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0916 K12608 - gmx:100788503 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0916 8 20329548 20332873 Vra8g0916 8 20329548 20332873 ECH