Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0915 ATGGAGGAAGAGGAGGATCGAATTTTGCTCTCTAGTTTGGGCGTAAAATCTGCCAATCCCGAAGACATTGAACGCGACGTTTTGGAAAAGGCTACTAAGAATGATTCAGTGACCGTTACTGAGGCTGAAGGTAGTGCCGAGGAAGAATGTTCTGATTTACCTGAAAATGTCGATCCATCAGCTAATGCTAAAGCTGAACTTCATCAGAAGTTGAGAGCTGTTCAATTTGAAATTGATGCCGTTGCCTCCACCGTTGAGCGGTTGAGAAATGTGGAAAATAATGAAGAATGTAGTGATGCTGGTGAAGACGACTTGGTGTCGGCTTTTGCTGAGGTTGATTCCTCCAACAATTCAAATCTTCAGTGTGCTCTTGCTGCAGATAGGTTGAGGAGTCTGAAGAAGACGAAAGCTCAACTAGAGAAAGAGCTTTTGAATTTGTCCAAGGATGATGCTTCCAAAAGTGTTGAGGATGAACAATTGATCTTTAGTTTAGTGAGGGAAGAACGGAAGCCCAAGAGGAAGGTTAAAGAAGATAAAAAGTCAGACAAAAGCAAGGGAAAACGACTTAAGAAAGTTTCGTTTGACGATGATGTTGATTTTGATACTGTTCTAGATGCAGCCTCTGCCGGCTTTGTTGAAACAGAAAGGGATGAACTGGTGAGAAAAGGAATTTTAACCCCTTTTCATAAGTTAAAGGGCTTTGAGCGCCGTTTTCAACAACTAGAAACATCAACTAGTCATAATGCAGCTGAGGAGGAAAATGCTAGTGATCTTGCTGCTGCAAGTGTTGAAAGAGCTGCCAAATCTATGTATGAGGCAGCAAGATCTCGCCCAACCACCAAGCTGCTTGAGCCTCAAGATGCACCGAAGCTTGATGCACCCACTTTTCCATTTCGAAGGCTCAGGAAACCACTACAATCTTCCAAAGCTCTGGATAGAGAAATGGAGCCAAATAAAGATTCAAAAAGGAAGAAGAGGCGGCCTCTGCCTGGAAGAAAGTGGACCAAGCGTGTGTCTTGCGATGATACACATATGGAAGAAAGTGAAAATGCAGATGGTTGCTTAGATAGTTCCAGTTTTGAAAATTTAGAAGAACAAGGCATTGATCTTGATGATCATGAATCTTATGTAACGTTAGAAGGTGGGCTGAAAATCCCCGATAAGATATTTGAAGCTCTGTTTGACTATCAAAAGGTTGGTGTTCAGTGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGTGATGAGATGGGACTTGGTAAAACTGTCCAGATCTTATCTTTCCTTGGTGCACTGCACTATAGTGGCATGTACAAACCTAGCATTATTGTCTGCCCTGTTACACTCTTGCGACAGTGGAAAAGGGAAGCTAACAAGTGGTACCCAAAATTCCTTGTAGAGCTTTTACACGAATCGGCTCAAGATTCTGCTCCTAGGAAGAAGCGAGCTAAATCTGAAGAAACAGACTCTGAAACCAATAGTTCAAGTGATAATGATTATGAAAAAAGTGAACCATCTAGAAACACAAAAAAATGGGAATCCCTGATAAATCATGTAATGAGATCAGAATCTGGATTACTTATCACCACTTATGAGCAGCTCAGAATATTGGGGGATCAGTTGCTTGATATTCAATGGGGGTATGCAGTTCTTGATGAAGGGCATAAAATAAGGAATCCAAATGCTGAAGTTACCCTCGTTTGCAAGCAGCTACAAACTGTACATCGAATCATAATGACTGGTGCACCTATTCAGAATAAACTGACTGAACTATGGTCATTGTTTGATTTTGTTTTTCCTGGAAAATTGGGTGTTTTGCCTGTATTCGAAGTTGAATTTGCAGTTCCTATAGCAGTTGGTGGGTATGCAAATGCTTCACCTTTGCAAGTATCCACTGCATACAGGTGTGCTGTGGTGCTGCGTGATTTAATCATGCCTTATCTTCTCCGACGGATGAAGGCTGATGTGAATGCCCAACTTCCAAAGAAGACGGAGCATGTTCTATTTTGCAGCCTTACACCAGAACAGGTATCTGCTTACAGAGCATTTTTAGCTAGCACTGATGTGGAGCAAATATTGGATGGACACAGGAATTCTCTTTATGGAATTGATGTGATGCGCAAGATCTGTAACCACCCTGATCTACTTGAAAGGGATCATGCCTTCAGTGATCCAGATTATGGAAATCCAGAACGTAGTGGGAAAATGAAAGTTGTTGGTCAAGTGCTTAATGTTTGGAAGGAACAAGGTGCAGATAGGGTGATCATCTTTGACCCTGACTGGAATCCCTCAAATGATATGCAGGCGAGAGAGCGGGCTTGGCGTATTGGTCAGAAGCGGGATGTAACCGTGTATAGGTTGATAACACGGGGAACTATTGAGGAGAAAGTGTATCACCGTCAGATTTACAAACATTTTCTTACAAATAAGATATTGAAGAATCCACAACAGAAAAGGTTCTTTAAGGCCCGGGATATGAAAGATCTTTTCGTACTTAACGTGGATGAAGGAACTGGGTCAACCGAAACTTCAAATATTTTTAGTCAAATATCTGAAGAAGTGACTGTCATTGGGACACAGAAAGAAAATAAGGATACGAATGAACATAGCCAAACTGCCAAACTGGATTCTGAAGATGTTGCAGTTAATAATGATGACAAGTCGGAGAGAGGATCTTCGGAGGGAAAGGGGAAAGAGAAGGTTGAACTTTATAATGGGGTTGATGATGGAACAGATATATTGAAAAGCCTTTTTGATGCCAATGGGATACATAGTGCCGTGAACCATGATTTGATCATGAATGCCCATGATGAGGAGAAGATGAGACTTGAGGAGCAAGCATCCCAAGTTGCACGAAGAGCTGCAGAAGCTTTACGTAAGTCACGAATGCTCAGAAGCCATGATAGTGTATCTGTTCCCACGTGGACAGGAAGGTCAGGAACTGCTGGTGCACCATCATCTGTTCGTCGGAAGTTTGGTTCAACAGTGAATCCCCTGTTGGTAAATAAAGGCAAGGTATATGACGAGTTACCCAGCAAGGGAACGGCGAAATTAAATGGATTCGCTGCTGGGGCATCCGCAGGTAAAGCTTTATCTTCTGTGGAACTTTTAGCTCAAATTCGAGGTAACCAAGAGAAAGCCATTGGTGCCGGGCTCGAACATCAGTCTAGCATGTTGTCAAGTTCCACGAATGAAGCAAGATCTGTAGATGTTAGATCTTTCAGGGCTACTGCAAGTTCATCTGGATTACAACCTGAAGTATTGATTCGGCAAATCTGCACTTTTATACAACAGCGAGGGGGTAGTTCTGATTCAGCTAGCATAGTTCAGTATTTCAAGGAACGTATTCCCTCACAAGATCTTGCCCTGTTCAAGAATCTTTTAAAGGAAATTGCGACTCTGCATAAAGGATCAAATGGATCTCATTGGGTTCTGAAACCAGACTATCAATTCTGA 3465 0.4219 MEEEEDRILLSSLGVKSANPEDIERDVLEKATKNDSVTVTEAEGSAEEECSDLPENVDPSANAKAELHQKLRAVQFEIDAVASTVERLRNVENNEECSDAGEDDLVSAFAEVDSSNNSNLQCALAADRLRSLKKTKAQLEKELLNLSKDDASKSVEDEQLIFSLVREERKPKRKVKEDKKSDKSKGKRLKKVSFDDDVDFDTVLDAASAGFVETERDELVRKGILTPFHKLKGFERRFQQLETSTSHNAAEEENASDLAAASVERAAKSMYEAARSRPTTKLLEPQDAPKLDAPTFPFRRLRKPLQSSKALDREMEPNKDSKRKKRRPLPGRKWTKRVSCDDTHMEESENADGCLDSSSFENLEEQGIDLDDHESYVTLEGGLKIPDKIFEALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTVQILSFLGALHYSGMYKPSIIVCPVTLLRQWKREANKWYPKFLVELLHESAQDSAPRKKRAKSEETDSETNSSSDNDYEKSEPSRNTKKWESLINHVMRSESGLLITTYEQLRILGDQLLDIQWGYAVLDEGHKIRNPNAEVTLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEVEFAVPIAVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTPEQVSAYRAFLASTDVEQILDGHRNSLYGIDVMRKICNHPDLLERDHAFSDPDYGNPERSGKMKVVGQVLNVWKEQGADRVIIFDPDWNPSNDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFVLNVDEGTGSTETSNIFSQISEEVTVIGTQKENKDTNEHSQTAKLDSEDVAVNNDDKSERGSSEGKGKEKVELYNGVDDGTDILKSLFDANGIHSAVNHDLIMNAHDEEKMRLEEQASQVARRAAEALRKSRMLRSHDSVSVPTWTGRSGTAGAPSSVRRKFGSTVNPLLVNKGKVYDELPSKGTAKLNGFAAGASAGKALSSVELLAQIRGNQEKAIGAGLEHQSSMLSSSTNEARSVDVRSFRATASSSGLQPEVLIRQICTFIQQRGGSSDSASIVQYFKERIPSQDLALFKNLLKEIATLHKGSNGSHWVLKPDYQF* 1155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0915 1154 Gene3D - 371 653 IPR038718 -
Vra8g0915 1154 MobiDBLite consensus disorder prediction 26 63 - -
Vra8g0915 1154 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 656 750 IPR027417 -
Vra8g0915 1154 MobiDBLite consensus disorder prediction 972 992 - -
Vra8g0915 1154 CDD SF2_C_SNF 752 791 - -
Vra8g0915 1154 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 752 839 IPR027417 -
Vra8g0915 1154 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 250 753 - -
Vra8g0915 1154 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 753 1053 - -
Vra8g0915 1154 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 405 604 IPR014001 -
Vra8g0915 1154 Coils Coil 122 149 - -
Vra8g0915 1154 PANTHER SNF2/RAD54 FAMILY MEMBER 250 753 - -
Vra8g0915 1154 PANTHER SNF2/RAD54 FAMILY MEMBER 753 1053 - -
Vra8g0915 1154 MobiDBLite consensus disorder prediction 269 356 - -
Vra8g0915 1154 MobiDBLite consensus disorder prediction 305 323 - -
Vra8g0915 1154 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 658 830 IPR001650 -
Vra8g0915 1154 Pfam SNF2-related domain 396 718 IPR000330 GO:0005524|GO:0140658
Vra8g0915 1154 Gene3D - 754 892 IPR027417 -
Vra8g0915 1154 Gene3D - 664 753 IPR027417 -
Vra8g0915 1154 SMART ultradead3 389 615 IPR014001 -
Vra8g0915 1154 MobiDBLite consensus disorder prediction 334 351 - -
Vra8g0915 1154 CDD DEXHc_ERCC6 393 603 - -
Vra8g0915 1154 MobiDBLite consensus disorder prediction 479 510 - -
Vra8g0915 1154 MobiDBLite consensus disorder prediction 864 904 - -
Vra8g0915 1154 Coils Coil 936 963 - -
Vra8g0915 1154 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 654 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0915 Vra-Chr8 20306654 20313715 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0915 739 833 RAD5 or RAD16-like Gene Family AT5G43530 35.789 2.78e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vra8g0915 SNF2_N 6.2e-61 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0915 K10841 - gmx:100820025 1242.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0915 8 20306654 20313715 Vra8g0915 8 20306654 20313715 ECH