Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra8g0915 | ATGGAGGAAGAGGAGGATCGAATTTTGCTCTCTAGTTTGGGCGTAAAATCTGCCAATCCCGAAGACATTGAACGCGACGTTTTGGAAAAGGCTACTAAGAATGATTCAGTGACCGTTACTGAGGCTGAAGGTAGTGCCGAGGAAGAATGTTCTGATTTACCTGAAAATGTCGATCCATCAGCTAATGCTAAAGCTGAACTTCATCAGAAGTTGAGAGCTGTTCAATTTGAAATTGATGCCGTTGCCTCCACCGTTGAGCGGTTGAGAAATGTGGAAAATAATGAAGAATGTAGTGATGCTGGTGAAGACGACTTGGTGTCGGCTTTTGCTGAGGTTGATTCCTCCAACAATTCAAATCTTCAGTGTGCTCTTGCTGCAGATAGGTTGAGGAGTCTGAAGAAGACGAAAGCTCAACTAGAGAAAGAGCTTTTGAATTTGTCCAAGGATGATGCTTCCAAAAGTGTTGAGGATGAACAATTGATCTTTAGTTTAGTGAGGGAAGAACGGAAGCCCAAGAGGAAGGTTAAAGAAGATAAAAAGTCAGACAAAAGCAAGGGAAAACGACTTAAGAAAGTTTCGTTTGACGATGATGTTGATTTTGATACTGTTCTAGATGCAGCCTCTGCCGGCTTTGTTGAAACAGAAAGGGATGAACTGGTGAGAAAAGGAATTTTAACCCCTTTTCATAAGTTAAAGGGCTTTGAGCGCCGTTTTCAACAACTAGAAACATCAACTAGTCATAATGCAGCTGAGGAGGAAAATGCTAGTGATCTTGCTGCTGCAAGTGTTGAAAGAGCTGCCAAATCTATGTATGAGGCAGCAAGATCTCGCCCAACCACCAAGCTGCTTGAGCCTCAAGATGCACCGAAGCTTGATGCACCCACTTTTCCATTTCGAAGGCTCAGGAAACCACTACAATCTTCCAAAGCTCTGGATAGAGAAATGGAGCCAAATAAAGATTCAAAAAGGAAGAAGAGGCGGCCTCTGCCTGGAAGAAAGTGGACCAAGCGTGTGTCTTGCGATGATACACATATGGAAGAAAGTGAAAATGCAGATGGTTGCTTAGATAGTTCCAGTTTTGAAAATTTAGAAGAACAAGGCATTGATCTTGATGATCATGAATCTTATGTAACGTTAGAAGGTGGGCTGAAAATCCCCGATAAGATATTTGAAGCTCTGTTTGACTATCAAAAGGTTGGTGTTCAGTGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGTGATGAGATGGGACTTGGTAAAACTGTCCAGATCTTATCTTTCCTTGGTGCACTGCACTATAGTGGCATGTACAAACCTAGCATTATTGTCTGCCCTGTTACACTCTTGCGACAGTGGAAAAGGGAAGCTAACAAGTGGTACCCAAAATTCCTTGTAGAGCTTTTACACGAATCGGCTCAAGATTCTGCTCCTAGGAAGAAGCGAGCTAAATCTGAAGAAACAGACTCTGAAACCAATAGTTCAAGTGATAATGATTATGAAAAAAGTGAACCATCTAGAAACACAAAAAAATGGGAATCCCTGATAAATCATGTAATGAGATCAGAATCTGGATTACTTATCACCACTTATGAGCAGCTCAGAATATTGGGGGATCAGTTGCTTGATATTCAATGGGGGTATGCAGTTCTTGATGAAGGGCATAAAATAAGGAATCCAAATGCTGAAGTTACCCTCGTTTGCAAGCAGCTACAAACTGTACATCGAATCATAATGACTGGTGCACCTATTCAGAATAAACTGACTGAACTATGGTCATTGTTTGATTTTGTTTTTCCTGGAAAATTGGGTGTTTTGCCTGTATTCGAAGTTGAATTTGCAGTTCCTATAGCAGTTGGTGGGTATGCAAATGCTTCACCTTTGCAAGTATCCACTGCATACAGGTGTGCTGTGGTGCTGCGTGATTTAATCATGCCTTATCTTCTCCGACGGATGAAGGCTGATGTGAATGCCCAACTTCCAAAGAAGACGGAGCATGTTCTATTTTGCAGCCTTACACCAGAACAGGTATCTGCTTACAGAGCATTTTTAGCTAGCACTGATGTGGAGCAAATATTGGATGGACACAGGAATTCTCTTTATGGAATTGATGTGATGCGCAAGATCTGTAACCACCCTGATCTACTTGAAAGGGATCATGCCTTCAGTGATCCAGATTATGGAAATCCAGAACGTAGTGGGAAAATGAAAGTTGTTGGTCAAGTGCTTAATGTTTGGAAGGAACAAGGTGCAGATAGGGTGATCATCTTTGACCCTGACTGGAATCCCTCAAATGATATGCAGGCGAGAGAGCGGGCTTGGCGTATTGGTCAGAAGCGGGATGTAACCGTGTATAGGTTGATAACACGGGGAACTATTGAGGAGAAAGTGTATCACCGTCAGATTTACAAACATTTTCTTACAAATAAGATATTGAAGAATCCACAACAGAAAAGGTTCTTTAAGGCCCGGGATATGAAAGATCTTTTCGTACTTAACGTGGATGAAGGAACTGGGTCAACCGAAACTTCAAATATTTTTAGTCAAATATCTGAAGAAGTGACTGTCATTGGGACACAGAAAGAAAATAAGGATACGAATGAACATAGCCAAACTGCCAAACTGGATTCTGAAGATGTTGCAGTTAATAATGATGACAAGTCGGAGAGAGGATCTTCGGAGGGAAAGGGGAAAGAGAAGGTTGAACTTTATAATGGGGTTGATGATGGAACAGATATATTGAAAAGCCTTTTTGATGCCAATGGGATACATAGTGCCGTGAACCATGATTTGATCATGAATGCCCATGATGAGGAGAAGATGAGACTTGAGGAGCAAGCATCCCAAGTTGCACGAAGAGCTGCAGAAGCTTTACGTAAGTCACGAATGCTCAGAAGCCATGATAGTGTATCTGTTCCCACGTGGACAGGAAGGTCAGGAACTGCTGGTGCACCATCATCTGTTCGTCGGAAGTTTGGTTCAACAGTGAATCCCCTGTTGGTAAATAAAGGCAAGGTATATGACGAGTTACCCAGCAAGGGAACGGCGAAATTAAATGGATTCGCTGCTGGGGCATCCGCAGGTAAAGCTTTATCTTCTGTGGAACTTTTAGCTCAAATTCGAGGTAACCAAGAGAAAGCCATTGGTGCCGGGCTCGAACATCAGTCTAGCATGTTGTCAAGTTCCACGAATGAAGCAAGATCTGTAGATGTTAGATCTTTCAGGGCTACTGCAAGTTCATCTGGATTACAACCTGAAGTATTGATTCGGCAAATCTGCACTTTTATACAACAGCGAGGGGGTAGTTCTGATTCAGCTAGCATAGTTCAGTATTTCAAGGAACGTATTCCCTCACAAGATCTTGCCCTGTTCAAGAATCTTTTAAAGGAAATTGCGACTCTGCATAAAGGATCAAATGGATCTCATTGGGTTCTGAAACCAGACTATCAATTCTGA | 3465 | 0.4219 | MEEEEDRILLSSLGVKSANPEDIERDVLEKATKNDSVTVTEAEGSAEEECSDLPENVDPSANAKAELHQKLRAVQFEIDAVASTVERLRNVENNEECSDAGEDDLVSAFAEVDSSNNSNLQCALAADRLRSLKKTKAQLEKELLNLSKDDASKSVEDEQLIFSLVREERKPKRKVKEDKKSDKSKGKRLKKVSFDDDVDFDTVLDAASAGFVETERDELVRKGILTPFHKLKGFERRFQQLETSTSHNAAEEENASDLAAASVERAAKSMYEAARSRPTTKLLEPQDAPKLDAPTFPFRRLRKPLQSSKALDREMEPNKDSKRKKRRPLPGRKWTKRVSCDDTHMEESENADGCLDSSSFENLEEQGIDLDDHESYVTLEGGLKIPDKIFEALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTVQILSFLGALHYSGMYKPSIIVCPVTLLRQWKREANKWYPKFLVELLHESAQDSAPRKKRAKSEETDSETNSSSDNDYEKSEPSRNTKKWESLINHVMRSESGLLITTYEQLRILGDQLLDIQWGYAVLDEGHKIRNPNAEVTLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEVEFAVPIAVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTPEQVSAYRAFLASTDVEQILDGHRNSLYGIDVMRKICNHPDLLERDHAFSDPDYGNPERSGKMKVVGQVLNVWKEQGADRVIIFDPDWNPSNDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFVLNVDEGTGSTETSNIFSQISEEVTVIGTQKENKDTNEHSQTAKLDSEDVAVNNDDKSERGSSEGKGKEKVELYNGVDDGTDILKSLFDANGIHSAVNHDLIMNAHDEEKMRLEEQASQVARRAAEALRKSRMLRSHDSVSVPTWTGRSGTAGAPSSVRRKFGSTVNPLLVNKGKVYDELPSKGTAKLNGFAAGASAGKALSSVELLAQIRGNQEKAIGAGLEHQSSMLSSSTNEARSVDVRSFRATASSSGLQPEVLIRQICTFIQQRGGSSDSASIVQYFKERIPSQDLALFKNLLKEIATLHKGSNGSHWVLKPDYQF* | 1155 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra8g0915 | 1154 | Gene3D | - | 371 | 653 | IPR038718 | - | |
Vra8g0915 | 1154 | MobiDBLite | consensus disorder prediction | 26 | 63 | - | - | |
Vra8g0915 | 1154 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 656 | 750 | IPR027417 | - | |
Vra8g0915 | 1154 | MobiDBLite | consensus disorder prediction | 972 | 992 | - | - | |
Vra8g0915 | 1154 | CDD | SF2_C_SNF | 752 | 791 | - | - | |
Vra8g0915 | 1154 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 752 | 839 | IPR027417 | - | |
Vra8g0915 | 1154 | PANTHER | DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED | 250 | 753 | - | - | |
Vra8g0915 | 1154 | PANTHER | DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED | 753 | 1053 | - | - | |
Vra8g0915 | 1154 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 405 | 604 | IPR014001 | - | |
Vra8g0915 | 1154 | Coils | Coil | 122 | 149 | - | - | |
Vra8g0915 | 1154 | PANTHER | SNF2/RAD54 FAMILY MEMBER | 250 | 753 | - | - | |
Vra8g0915 | 1154 | PANTHER | SNF2/RAD54 FAMILY MEMBER | 753 | 1053 | - | - | |
Vra8g0915 | 1154 | MobiDBLite | consensus disorder prediction | 269 | 356 | - | - | |
Vra8g0915 | 1154 | MobiDBLite | consensus disorder prediction | 305 | 323 | - | - | |
Vra8g0915 | 1154 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 658 | 830 | IPR001650 | - | |
Vra8g0915 | 1154 | Pfam | SNF2-related domain | 396 | 718 | IPR000330 | GO:0005524|GO:0140658 | |
Vra8g0915 | 1154 | Gene3D | - | 754 | 892 | IPR027417 | - | |
Vra8g0915 | 1154 | Gene3D | - | 664 | 753 | IPR027417 | - | |
Vra8g0915 | 1154 | SMART | ultradead3 | 389 | 615 | IPR014001 | - | |
Vra8g0915 | 1154 | MobiDBLite | consensus disorder prediction | 334 | 351 | - | - | |
Vra8g0915 | 1154 | CDD | DEXHc_ERCC6 | 393 | 603 | - | - | |
Vra8g0915 | 1154 | MobiDBLite | consensus disorder prediction | 479 | 510 | - | - | |
Vra8g0915 | 1154 | MobiDBLite | consensus disorder prediction | 864 | 904 | - | - | |
Vra8g0915 | 1154 | Coils | Coil | 936 | 963 | - | - | |
Vra8g0915 | 1154 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 377 | 654 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra8g0915 | Vra-Chr8 | 20306654 | 20313715 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra8g0915 | 739 | 833 | RAD5 or RAD16-like Gene Family | AT5G43530 | 35.789 | 2.78e-07 | 53.1 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SNF2 | Vra8g0915 | SNF2_N | 6.2e-61 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra8g0915 | K10841 | - | gmx:100820025 | 1242.64 |