Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0911 ATGACAAATAGTCTGGTTTGGGTATCAAAAACAAAATTCAAGAAAATAATGGAAGCACATCCTACTTTCTCCATTGAAAGATCAAAGCAACTCAATAGCATGGGGATGTCTGGAGCACTTTCTTCATCTTTGTCAATCCTTCCAATACCCACAGAAGATATGTATCCTAGGCTGCCTGAATCACAGTTGGATATTGTAGAACAAGAACTTATGACAAGACCTTATACTCATTCAAGTTATTTGAATTCCAATGGAGTAGTTGGGCATATTATTTCGTCTTCCTCTGGATATTCAATTGACCTTCATCACTCATCTCTTTCACCTGATGAAAAACACTCTACTAACGCTCATTTTATTTCACAATCATCAACCAACATTGCCCAATTTCCATTATCATATTCTTCGAGTACTGCACTACCAACTTCAGCAACACCAACCCATTTTTCCAAAGAAAACAGTGCTTCCTGGCATTCAGAGTCCCTGCCAAGTTTTCTGGATTTTCCTGCACATGACTCAATGGACGATAATAGGGTAGAAAGTAGTGATTGCCCAATCATGGCATCGGAGGAGTATTGTAAACAAAATGATTGGCAGGAGTGGGCTGATCGGCTAATCAGTGATGATGACACTTTGACTTCTAATTGGGATGACCTTCTCACTGACAACATTCGAGACATTGAGCCAAAGGTGCCATTCCAGGTTGCAAAACCACTTTCACAGTTTCCAGGACATCAATCCCAAGGTCTACAACAACTTCCTGCTTCATTAGGAGAAAATTGCTCTGGAGCTACCCTCTCCTCCTCAGCAAATTCTACTCCTGCCAAGTCACGAATGCGTTGGACACCAGAACTTCACGAGGCGTTTGTGGAGGCTGTCAACCAACTTGGGGGAAGTGAAAGAGCTACTCCAAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTGAAAAGCCATTTGCAGAAATACAGGACAGCTAGATATAGACCGGAGTCATCTGAAGGAGTTGCGGAGAAAAAAGCAGGTTCCATTGAAGAGATGTCATCTCTAGATTTAAAAACTGGTATTGAGATCACTGAAGCTCTACGACTACAAATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAGATTCAAAGAAATCTGCAGCTGCGAATAGAAGAACAAGGAAGGTACCTCCAGATGATGTTTGAGAAGCAACGTAAATCTGAAACTGAAGCGTTGAAGGCATCATCATCTACTATTGAGAGTCAATCTGGAGTATCTTCGAATGCCACGAGAGACTTCCCGGTCAAAAATGTTTTGGAAGCAACACAAGTGGACCATTGTAGGTCAGGACCTGATCAAGCTAACCGCAGTACCACAGTTGAGGAAGGCTCGCTGGAAAAGGGTCGGAATCCTGATTCTCCCAAAACTCAACATGGTATTGCTAGTGATGATAGTGCACAAGCTCCAAAACGTCAAAGAACAGAGTAA 1488 0.422 MTNSLVWVSKTKFKKIMEAHPTFSIERSKQLNSMGMSGALSSSLSILPIPTEDMYPRLPESQLDIVEQELMTRPYTHSSYLNSNGVVGHIISSSSGYSIDLHHSSLSPDEKHSTNAHFISQSSTNIAQFPLSYSSSTALPTSATPTHFSKENSASWHSESLPSFLDFPAHDSMDDNRVESSDCPIMASEEYCKQNDWQEWADRLISDDDTLTSNWDDLLTDNIRDIEPKVPFQVAKPLSQFPGHQSQGLQQLPASLGENCSGATLSSSANSTPAKSRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGVAEKKAGSIEEMSSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQRKSETEALKASSSTIESQSGVSSNATRDFPVKNVLEATQVDHCRSGPDQANRSTTVEEGSLEKGRNPDSPKTQHGIASDDSAQAPKRQRTE* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0911 495 Gene3D - 274 333 - -
Vra8g0911 495 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 65 495 IPR044848 GO:0003700
Vra8g0911 495 SUPERFAMILY Homeodomain-like 272 329 IPR009057 -
Vra8g0911 495 Pfam MYB-CC type transfactor, LHEQLE motif 360 407 IPR025756 -
Vra8g0911 495 Coils Coil 363 383 - -
Vra8g0911 495 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 272 332 IPR017930 -
Vra8g0911 495 PANTHER PROTEIN PHR1-LIKE 1-LIKE ISOFORM X1 65 495 - -
Vra8g0911 495 Pfam Myb-like DNA-binding domain 277 328 IPR001005 -
Vra8g0911 495 MobiDBLite consensus disorder prediction 408 495 - -
Vra8g0911 495 MobiDBLite consensus disorder prediction 411 433 - -
Vra8g0911 495 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 275 329 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0911 Vra-Chr8 20252319 20259168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0911 48 416 G2-like Transcription Factor Family AT4G28610 49.735 1.89e-100 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra8g0911 Myb_DNA-binding 9.4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0911 - - gmx:100793593 763.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0911 8 20252319 20259168 Vra8g0911 8 20252319 20259168 ECH
Vra8g0911 8 20252319 20259168 Vra3g0214 3 2439948 2447359 ECH
Vra3g0214 3 2439948 2447359 Vra8g0911 8 20252319 20259168 PCT