Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0908 ATGGCACCCAATAAAAGAGTGGTAGCGGCCTACCGTGCAATGGGAAGTCTTGGAATTGATGAGTCGAAAGTGAAATCAGCGTTAAAGAAACTCCTCAAAGTGTTTGACAAAAACTGGGAACTTATAGAGGCAGAGAACTATAGAGTTCTAGTAGATGCTATATTTGAGGAGGACGATAATATGGTGCCCGAAGAGAAAAAGAAAATCCGGTCTGACGATGTACATGACACTCATCATTCTTTGCCTTCCTTTTCAAACAACCAGGAAGATGAGACAGAATGTGAAGAGACTCAGATGAATAATGAAAGACCCCAACCTTTAAAAAGGCTGCGATTAAGAGGCCAGGACTGTCAGCCTTTGCGTCCTATGACTAACATTGCCACCAGCCCTCCTTCGAAAAGGCCTAAATTAGAAGATAATGCACTACACCAGGGTTCTTCTGGGATGAAACCTCAAAACAAGCCAGAGTCATCTGATGGCAATCCAAGGATTGAAGCACCGTTAGTTAGACCACCAGATGACATTGTTGATAAGGGAAAGCAACCTGCATCAGCCCAAGTTTTGCAAAGAGGAAGAGAACTTACATCTGGAAGATCGTCCCCATCCACACCATCTAAAGAACGAACAGTTAAATCGGGGAAGTTTTTGATGCCAAACAACACAATACCTCGTACGCAGGCACTTATCATACCCAAGGACGAGCCTGTTGATGAAGTGCCTGACTATGGAATGCCCATTGCAGTGATTCTTCCTGAACCATCATGCGTAAGGGACTCATCATTCAGTAATGGTGTAGCTGGAAAGCATGTCAACCATGATACTGTGACATCATCAGCATTCAGAAATAGAGTCAGAGATGAAGATGTTCTTCCTACCTCAAATGAAGAAGCCACATGTAATGTAGAGATAGCCTCATCAACTCTTGGAGAAGTAAAACTTTCTTTGAGCTGCAGCTCAGCACTTTGGGGATCAAATTTTCACATGCCTAGTCGAGATGAACTCATAGAAATGATGGAGGCGAAATGCCTGCGTTCATATAAAATTGCTGACCCAAATTTCTCTGTTATGAAACTGTTGATGGATGTATGTAATTGCATGTTGGAACTCGGAAACAATTCTAATAATGGTCCAGAAGGTTCTACAGGGACATCCAATGTTGTTGATGTGTCAAAGGAATTACAAGAACCTGACACAGTGAGTGTGGAAAGAAACAAAGATTTCGACATCCTTTCTCATGTTTCAAATGGATCCATCAATGTTAATCCTTCTGCTGCATTGGTTTCTCCCCAAAGTTTCCTTCCTCGTACTGACCTGATTGGTCTGAATGATGCTATCTTGGTTTCCAAGATGGACCAAACAAAATATGATTTTTTACAATGTAATGTAAAGAAGGAGCTGGAAGATTCTATGTCTCCAAATTCACATAGTTTAGTGATTGTTCCACAGCATCAGCTGACATCTGATGATATAAGGTCTTTTTATGATGCTATTGACCTCACAAAAGGAGAAGAAAATGTTGAAATTCCTTGGGTGAATGAATATACTAATGATTTCCCAGCATCCTTTAACTACATACCCCGAAACCTTGTGTTCCAAGATGCTTATGTTAACATTTCTCTATCACGTATTGGCAGTGAGGACTGTTGTTCAACTTGTATGGGCAATTGTGTCTTGTCACCATGTGCTTGTGCAAATAAAACTGGTGGTGAATTTGCTTATAGTTCTCAAGGCCTACTGAGGGAACAATTTTTGGAAGAATGCATTGCCACTAGTCGCAATCCACAAAACCATTTATTTTATTGCAAAATTTGCCCACTTGAAAAATCTAAGAATGATGGTGGTTTAGAACCTTGTAAAGGACACATAAAGAGGAAGTTTATTAAAGAATGCTGGAGCAAATGTGGCTGTGGGAAACAGTGTGGAAATCGGATTATCCAGCGAGGAATAACTTGCAAATTGCAGGTGTTTTTCACTTCAGAAGGTAAAGGATGGGGTCTTCGTACCTTAGAGGACCTGCCTAAAGGTGCATTTGTATGTGAGTTTGTTGGAGAAATTTTATCTATTAAAGAGTTGCACGAGAGGAACATGAAATGCACTGGAAAAGGGAAACATACATACCCAGTGCTACTGGATGCAAATTGGGATTCAGGATATATGAAGAACAAAGAAGCTCTATGCTTGGATTCAGCTTCGTTTGGCAACATTGCTAGGTTTATCAATCACAGATGTTTTGATGCAAACTTGGTTGAAATCCCAGTTGAAGTTGAGGATCCTGGTCATTATTACTACCATTTTGCTTTTTTTACTACTAGAAAAATAGCAGCACTTGAGGAGCTAACATGGGTGAGCAAGCTTGTTAGTGATTATGGCATCGACTTTGATGATCATGATCATCCTATCAAGCTTTTCCAGTGCAGTTGTGGCAGTAAATTCTGCAGGCATATAAAGAGGTCAAACAGATCCAGTAGATCTGCGTCAATATCCGGATGA 2490 0.406 MAPNKRVVAAYRAMGSLGIDESKVKSALKKLLKVFDKNWELIEAENYRVLVDAIFEEDDNMVPEEKKKIRSDDVHDTHHSLPSFSNNQEDETECEETQMNNERPQPLKRLRLRGQDCQPLRPMTNIATSPPSKRPKLEDNALHQGSSGMKPQNKPESSDGNPRIEAPLVRPPDDIVDKGKQPASAQVLQRGRELTSGRSSPSTPSKERTVKSGKFLMPNNTIPRTQALIIPKDEPVDEVPDYGMPIAVILPEPSCVRDSSFSNGVAGKHVNHDTVTSSAFRNRVRDEDVLPTSNEEATCNVEIASSTLGEVKLSLSCSSALWGSNFHMPSRDELIEMMEAKCLRSYKIADPNFSVMKLLMDVCNCMLELGNNSNNGPEGSTGTSNVVDVSKELQEPDTVSVERNKDFDILSHVSNGSINVNPSAALVSPQSFLPRTDLIGLNDAILVSKMDQTKYDFLQCNVKKELEDSMSPNSHSLVIVPQHQLTSDDIRSFYDAIDLTKGEENVEIPWVNEYTNDFPASFNYIPRNLVFQDAYVNISLSRIGSEDCCSTCMGNCVLSPCACANKTGGEFAYSSQGLLREQFLEECIATSRNPQNHLFYCKICPLEKSKNDGGLEPCKGHIKRKFIKECWSKCGCGKQCGNRIIQRGITCKLQVFFTSEGKGWGLRTLEDLPKGAFVCEFVGEILSIKELHERNMKCTGKGKHTYPVLLDANWDSGYMKNKEALCLDSASFGNIARFINHRCFDANLVEIPVEVEDPGHYYYHFAFFTTRKIAALEELTWVSKLVSDYGIDFDDHDHPIKLFQCSCGSKFCRHIKRSNRSSRSASISG* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0908 829 ProSiteProfiles Pre-SET domain profile. 548 648 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Vra8g0908 829 MobiDBLite consensus disorder prediction 145 159 - -
Vra8g0908 829 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 311 - -
Vra8g0908 829 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 373 826 - -
Vra8g0908 829 SUPERFAMILY SET domain 505 813 IPR046341 -
Vra8g0908 829 SMART set_7 651 796 IPR001214 GO:0005515
Vra8g0908 829 MobiDBLite consensus disorder prediction 188 218 - -
Vra8g0908 829 Gene3D SET domain 481 798 IPR046341 -
Vra8g0908 829 Pfam Ubiquitin-binding WIYLD domain 4 60 IPR018848 GO:0018024
Vra8g0908 829 SMART preset_2 496 635 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Vra8g0908 829 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 829 IPR025776 -
Vra8g0908 829 CDD SET_SETDB-like 520 790 - -
Vra8g0908 829 Pfam Pre-SET motif 500 643 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Vra8g0908 829 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 373 826 - -
Vra8g0908 829 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 311 - -
Vra8g0908 829 Pfam SET domain 663 781 IPR001214 GO:0005515
Vra8g0908 829 MobiDBLite consensus disorder prediction 68 218 - -
Vra8g0908 829 Gene3D - 1 60 IPR043017 -
Vra8g0908 829 ProSiteProfiles SET domain profile. 651 784 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0908 Vra-Chr8 20183064 20190964 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0908 627 815 C2H2 Transcription Factor Family AT2G23740 38.462 4.79e-27 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vra8g0908 Pre-SET 1.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0908 - - vun:114190802 1499.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0908 8 20183064 20190964 Vra8g0908 8 20183064 20190964 ECH
Vra8g0908 8 20183064 20190964 Vra3g0297 3 3517382 3524577 PCT