Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0904 ATGTCAACTGTGTCCAAAGATGACAACTTGGTGCTGTCTTCGGAGGATTCTTCTTGCCCAGAAGAGTCTGAGATCGAATTGGGTCTTGGGTTGAGCATCTCAGGCCCTTCTAAGTCTTACCACCATGTCCACGCTCATGCTCCTTCTCCTTATGCTAGGATTTTCACAGCCAAGGCTTTTCCTTCTTCACCATCACCATCACCATCACCATCACCTTCCTCTTCTTCCTCTTCCTCTCCCAACATCACTGCTGGCACCAAGAGAGCTGCTGAATCTCTTGTTGCAAATAATCGTCCCAGTCAAGTAGTTGGATGGCCTCCACTTCGGACATATAGAGTGAATAGCTACAATATCCATGCAAAATCAACAGAAGTATTCAACTCAGTGCCTGAGAAGAGTAAAGGCAACAATACTGTGGTAAGGAAAAGTGCTGACAATGGCAATGGTAACAACATTAATGCCAAAGAAAAAAGACAGGTCAGGAGTTCCCTGTTCGTCAAGGTAAATATGGATGGAATACCTATTGGGAGGAAGGTTGATTTGAGCGCTCATAGTTCCTATGAAACCTTAGCACAAACGTTGGAGGACATGTTTAACGAATCAACCACAGTCACCACTTGCAAAGGAGCAAATGGTGAGGATCATGGAATTATTATTGGAGGAGAAAGGCATTCAAAATTGTTGGATGGATCTTCCAAGTTTGTGCTCACTTACGAAGACAAGGAAGGAGATTGGATGCTTGTTGGGGATGTTCCTTGGGGGATGTTCCTTAGCTCGGTGAGGAGGCTAAGAATAATGAGGACATCTGAGGCTAATGGACTTGCACCAAGATTCGAAGAAAACATCAGACAGAAATGCAAGCCCATATAG 870 0.4448 MSTVSKDDNLVLSSEDSSCPEESEIELGLGLSISGPSKSYHHVHAHAPSPYARIFTAKAFPSSPSPSPSPSPSSSSSSSPNITAGTKRAAESLVANNRPSQVVGWPPLRTYRVNSYNIHAKSTEVFNSVPEKSKGNNTVVRKSADNGNGNNINAKEKRQVRSSLFVKVNMDGIPIGRKVDLSAHSSYETLAQTLEDMFNESTTVTTCKGANGEDHGIIIGGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFLSSVRRLRIMRTSEANGLAPRFEENIRQKCKPI* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0904 289 Pfam AUX/IAA family 81 277 IPR033389 -
Vra8g0904 289 MobiDBLite consensus disorder prediction 129 152 - -
Vra8g0904 289 PANTHER AUXIN-RESPONSIVE PROTEIN IAA11 8 280 - -
Vra8g0904 289 ProSiteProfiles PB1 domain profile. 163 270 IPR000270 GO:0005515
Vra8g0904 289 SUPERFAMILY CAD & PB1 domains 159 266 - -
Vra8g0904 289 MobiDBLite consensus disorder prediction 1 23 - -
Vra8g0904 289 MobiDBLite consensus disorder prediction 1 18 - -
Vra8g0904 289 MobiDBLite consensus disorder prediction 60 95 - -
Vra8g0904 289 Gene3D - 158 279 - -
Vra8g0904 289 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 280 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0904 Vra-Chr8 20119462 20123341 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0904 156 277 B3 DNA Binding Superfamily AT1G59750 34.426 9.82e-15 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vra8g0904 AUX_IAA 1.1e-61 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0904 K14484 - gmx:100779400 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0904 8 20119462 20123341 Vra8g0904 8 20119462 20123341 ECH