Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0903 ATGCAGCTGAAAACTCAGTTTTTCTTCTACTTCTGTTGCATGTGCTGTTTCAAATATGGCTTTGCTGCTGCAGCAAATGATGAAGCGTCTGCTTTACTTTCTATAAAAGCAGGTCTTATTGATCCACTGAATAGCCTGCTTGATTGGAAATTGTTGGTCAAAGCAAAAGGGAAGGGTGCAGCTCATTGTAACTGGACTGGTGTCCACTGCAACTCAGGTGGAGAAGTGGATAGCCTTGATCTCTCCCGCATGAATCTTAGTGGCACTGTGTCCAGTGAGATACAAAGGCTAAAGAGTCTTACTTCTCTCAACTTGTGTTGCAACGAATTTTCCTCTTCATTATCATTCATAGCCAATCTCACCACACTCAAGACTCTTGATGTGAGCCAGAATTTCTTCACTGGTGACTTTCCATTAGGCCTTGGAAAGGCATTGGGACTTACGACCTTAAATGCATCCAGCAACAATTTCTCTGGCTTTCTTCCAGAAGATCTGGGAAATGTCTCTTCCTTGGAGACTTTAGATTTCAGAGGCAGCTTCTTTGAAGGGTCAGTTCCAAAATCCTTCAGTAACTTGCACAGGCTGAAGTTCCTCGGTTTATCTGGGAATAATCTCACTGGAGAAATCCCTGGAGAGTTGGGCCAACTTTCATCACTGGAGTGCTTGATCATTGGATATAATGAATTTGAAGGTGGTATTCCAGCTGAGTTTGGAAATCTCACTATGTTAAAGTATCTTGATTTAGCAGAAGGCAATCTTGGTGGTGAAATTCCAGCCGAGTTGGGAAAGCTCAAACTGTTGAATACAGTTTTCTTGTACAAAAACAAATTAGAAGGAAGGATTCCACCGACAATTGGCACCATGACTTCATTGGTGCAGCTGGATCTCTCAGACAACATGTTATCAGGAAATATACCGGCTGAAATAAGTCAGCTGAAGAATTTACAGCTTCTGAACTTCATGCGCAACCGGCTATCTGGTCCTGTGCCTTCTGGCCTTGGAGACTTGCCTCAACTTGAGGTGCTTGAGCTCTGGAACAATTCCTTGTCAGGGTCATTGCCTAGAAATCTTGGCAAGAATTCACCGTTGACGTGGTTGGATGTATCATCTAATTTGCTCTCTGGTGAGATTCCAGAAACTCTTTGCACCAAAGGCTATCTCACCAAGCTCATACTTTTCAATAATGCCTTCATGGGTCCAATTCCGGCAAGCCTATCAACATGTCCTTCAATTGTCCGTGTTCGAATTCAGAACAATTTTCTTTCTGGGACAATTCCTGTGGGCCTTGGTAAGCTTAGGAAGCTTCAGAGGTTAGAATTAGCAAACAATAGTCTCACTGGTGGAATTCCTAATGACATTGGTTCTTCTACATCCCTTTCTTTCATTGATTTTTCCATAAACAATCTCCACTCTTCTCTTCCTTCAAACATTCTTTCTATTTCAAATCTGCAAACTTTAATTGTCTCGAACAATAACTTGAGAGGTGAAATCCCAGACGAATTCCAGGATTGTCCCTCACTAGGTGTCCTTGATCTCTCACGAAATCAACTCTCTGGAGGCATTCCAGCAAGCCTTGCATCATGCCAGAAATTGGTAAACTTGAATCTACAGAATAACCAATTAACGGGTGAAATCCCAAAAGCATTAGCAAGCATGCCAACATTAGCCATTCTTGATCTTGCCAACAACTCTCTGAGTGGTCAAATACCTGGAAACTTTGGTAGTTCTCCAGCTTTGGAAACATTCAACGTCTCGCACAACAAGTTAAATGGTCCTGTCCCAGAAAACGGAGTGCTAAGAACAATAAACCCAAATGATCTTGCGGGGAATGCTGGCTTATGTGGTGCTGTCCTCCCCCCATGTGGCCAAATCTCTGCATATCCGTTAAGGCGTGGGAGCTCAAATGCAAAGCACATTATTGTAGGATGGATCATAGGAATATCATCTATATTAGCCATTGTGGTTACGACTGTGGTAGCAAGATCTTTATACATAAGGTGGTACACTGAGGGATTGTGCTTCCAGGAAAAATTTTATAAGGGTAGGAAGGGGTGGCCATGGAGATTGATGGCCTTTCAGAGGCTTGATTTTACAAGTAGTGACATTTTATCTTGCATCAAGGATACAAATATGATTGGTATGGGAGCGACTGGGGTTGTCTACAAGGCTGAGATACCACAATCTAGTACAATCGTGGCTGTCAAGAAGTTGTGGAGATCAGGATCAGATATCGAAGTAGGAAGCGGTGATAACCTTGTTGGTGAGGTGAATCTTTTAGGGAGGTTAAGGCATAGGAACATTGTTAGACTACTGGGATTTCTTTACAATGACGCTGATGTGATGATAGTTTATGAATTTATGCACAATGGAAACCTTGGAGATGCTCTGCATGGTAAACAAGCTGGGAGATTACTTGTAGACTGGGTTTCCCGATATAACATAGCTCTAGGAATTGCAGATGGACTTGTTTATCTTCATCATGATTGTCATCCACCAGTTATCCATCGAGACATAAAGTCAAATAATATACTGCTTGATGCAAATCTTGAGGCAAGGATAGCAGATTTTGGGTTGGCAAAGATGATGCTCAGGAAGAATGAAACAGTCTCCATGATTGCTGGATCTTATGGATACATTGCCCCTGAATATGGATACTCCTTGAAAGTGGATGAAAAGATTGACATTTACAGTTATGGAGTGGTTCTGTTGGAGCTTCTGACTGGAAAGCGACCCTTAGAACCTGAGTTTGGAGAATCTATAGACATAGTAGGGTGGATTAGAAGGAAGATAGACACAAAATCTGCACATGAAGCATTAGACCCGAGTGTAGGAAACTGCAAGTATGTTCAAGAAGAGATGATTTTAGTTCTCAAGATAGCACTGCTATGCACTGCTAAGTTCCCCAAGGACAGACCATCCATGAGGGATGTTAGAATGATGCTTGGAGAGGCAAAGCCTAGGAGAAAAAGTGGCAGGAGCAGTGAAACATTTTCAGCTAACAAGGAAATGTCAGCTAATATTAGCACACCAGCAGTTAATGGCCTTCTATAG 3051 0.4225 MQLKTQFFFYFCCMCCFKYGFAAAANDEASALLSIKAGLIDPLNSLLDWKLLVKAKGKGAAHCNWTGVHCNSGGEVDSLDLSRMNLSGTVSSEIQRLKSLTSLNLCCNEFSSSLSFIANLTTLKTLDVSQNFFTGDFPLGLGKALGLTTLNASSNNFSGFLPEDLGNVSSLETLDFRGSFFEGSVPKSFSNLHRLKFLGLSGNNLTGEIPGELGQLSSLECLIIGYNEFEGGIPAEFGNLTMLKYLDLAEGNLGGEIPAELGKLKLLNTVFLYKNKLEGRIPPTIGTMTSLVQLDLSDNMLSGNIPAEISQLKNLQLLNFMRNRLSGPVPSGLGDLPQLEVLELWNNSLSGSLPRNLGKNSPLTWLDVSSNLLSGEIPETLCTKGYLTKLILFNNAFMGPIPASLSTCPSIVRVRIQNNFLSGTIPVGLGKLRKLQRLELANNSLTGGIPNDIGSSTSLSFIDFSINNLHSSLPSNILSISNLQTLIVSNNNLRGEIPDEFQDCPSLGVLDLSRNQLSGGIPASLASCQKLVNLNLQNNQLTGEIPKALASMPTLAILDLANNSLSGQIPGNFGSSPALETFNVSHNKLNGPVPENGVLRTINPNDLAGNAGLCGAVLPPCGQISAYPLRRGSSNAKHIIVGWIIGISSILAIVVTTVVARSLYIRWYTEGLCFQEKFYKGRKGWPWRLMAFQRLDFTSSDILSCIKDTNMIGMGATGVVYKAEIPQSSTIVAVKKLWRSGSDIEVGSGDNLVGEVNLLGRLRHRNIVRLLGFLYNDADVMIVYEFMHNGNLGDALHGKQAGRLLVDWVSRYNIALGIADGLVYLHHDCHPPVIHRDIKSNNILLDANLEARIADFGLAKMMLRKNETVSMIAGSYGYIAPEYGYSLKVDEKIDIYSYGVVLLELLTGKRPLEPEFGESIDIVGWIRRKIDTKSAHEALDPSVGNCKYVQEEMILVLKIALLCTAKFPKDRPSMRDVRMMLGEAKPRRKSGRSSETFSANKEMSANISTPAVNGLL* 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0903 1016 PANTHER UNNAMED PRODUCT 2 997 - -
Vra8g0903 1016 ProSiteProfiles Protein kinase domain profile. 706 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0903 1016 ProSitePatterns Protein kinases ATP-binding region signature. 712 736 IPR017441 GO:0005524
Vra8g0903 1016 Gene3D Ribonuclease Inhibitor 24 178 IPR032675 -
Vra8g0903 1016 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 2 997 - -
Vra8g0903 1016 SUPERFAMILY RNI-like 281 591 - -
Vra8g0903 1016 Pfam Leucine rich repeat N-terminal domain 25 71 IPR013210 -
Vra8g0903 1016 Gene3D Ribonuclease Inhibitor 282 383 IPR032675 -
Vra8g0903 1016 ProSitePatterns Serine/Threonine protein kinases active-site signature. 833 845 IPR008271 GO:0004672|GO:0006468
Vra8g0903 1016 SUPERFAMILY L domain-like 62 350 - -
Vra8g0903 1016 Pfam Protein kinase domain 708 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0903 1016 Gene3D Ribonuclease Inhibitor 179 281 IPR032675 -
Vra8g0903 1016 SMART serkin_6 706 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0903 1016 SMART LRR_typ_2 480 503 IPR003591 -
Vra8g0903 1016 SMART LRR_typ_2 552 576 IPR003591 -
Vra8g0903 1016 SMART LRR_typ_2 288 312 IPR003591 -
Vra8g0903 1016 SMART LRR_typ_2 336 360 IPR003591 -
Vra8g0903 1016 SMART LRR_typ_2 432 456 IPR003591 -
Vra8g0903 1016 SMART LRR_typ_2 192 216 IPR003591 -
Vra8g0903 1016 Pfam Leucine Rich Repeat 434 454 IPR001611 GO:0005515
Vra8g0903 1016 SUPERFAMILY Protein kinase-like (PK-like) 701 981 IPR011009 -
Vra8g0903 1016 Pfam Leucine rich repeat 481 541 IPR001611 GO:0005515
Vra8g0903 1016 Gene3D Transferase(Phosphotransferase) domain 1 791 1007 - -
Vra8g0903 1016 Gene3D Ribonuclease Inhibitor 384 625 IPR032675 -
Vra8g0903 1016 MobiDBLite consensus disorder prediction 983 1003 - -
Vra8g0903 1016 Gene3D Phosphorylase Kinase; domain 1 706 790 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0903 Vra-Chr8 20115114 20119620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0903 7 990 Receptor kinase-like Gene Family AT1G08590 60.319 0.0 1146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra8g0903 Pkinase 8.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0903 - - gmx:100788430 1759.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0903 8 20115114 20119620 Vra8g0903 8 20115114 20119620 ECH