LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra8g0902	ATGGCCGTGGTCTCCTGCATGCTTATTATCTTTCTTTGTTTTCCATTTCTAAAATTTGTATCTGTAGCCACCGCCCAGAAGCACGTATGTGATAATGGCAACGGCAACTACACAGCCAACAGCACCTACAGCAGCAACCTCAACACCCTTTTATCCACTCTCTCTTCCAACACACAAATCAACTACGGTTTCTACAACTTTTCATATGGCCAAAACAGTGACATAGCTAATGCCATAGGGCTCTGTAGAGGAGATGTTGAGTCAGAGAGGTGCCGCAGCTGCCTCAAAAACTCCACACTCGATATACAACACAGATGTCCAAACCAGAAAAATGCAATTCTATGGTCCGATCTATGCATGTTGCGCTACTCTAACGAAACAATATTCCATAAAATGGAAACTTCTCCTGGTTATTACTGGTGGAACTTAGAAAATGTAACAGAACTGAATCAGTTCAGCCAAGTGCTCGGGAACTTAATGAAGCGCCTAAGAGGGATAGCTGCATCAGGTGACTCCCGTCGTAAGTATGCTGCGGCAGAAAATGCAACTGGTTTAAATTTTCAGACCATATACGGTGCTGTGCAGTGCACCCCTGATTTGTCTCAACAAGAATGTAATCAATGCTTAGAGGGGGCTATCTCAGAGATCCCAAACTGCTGCGATGACAAGGTAGGAGGTAGAGTTCTTAGACCAAGTTGTAATCTTAGATTCGAAACTTACAGATTCTACGGAACTGAAACAACATTAGACCCGGTTCCAGAGGCACCTCCTCCATCCAATACCACTTCCTCAAAAGAAAGTGGCAACACGACAATAATTGTCATTGCGGTAGTTGTGCCTACTGTTGTTGTTGTTATTTTGCTCATTTGTCTCTTGCTATATTTAAGGAGGTTGAAGGCAAGGAAAAATCTTGCAGTTAAAGAAGAACAAGATGATGAGGATGAAATTAAAATTGTTGAGTCATTGCATTTCAACTTTGACGCAATACGAGTTGCTACCGAGGACTTCTCTGATTCTAAAAGACTTGGACAAGGTGGATTTGGAGCTGTTTACTGGGGCAGGCTCCCCAATGGACAGATAATTGCAGTGAAAAGGTTGTCGAGAGATTCTGGACAAGGAGATACGGAATTTAAGAATGAAGTGCTTTTAGTGGTGAAGCTTCAGCACCGGAATTTAGTTAGGCTACTTGGTTTCTGTTTGGAAGGAAGAGAAAGATTACTCATCTATGAATTTGTTCCCAATAAAAGCCTTGATTACTTCATCTTTGATCCAGCCATGAAAGCACAGTTGGATTGGGAAAAGCGCTACAAAATCATTAGAGGTATTGCTCGAGGTCTTCTCTACCTTCACGAAGATTCTCAGCTACGAATTATCCATCGAGATCTCAAAGCAAGCAACATTCTCTTAGACGATGAGATGAATCCTAAGATAGCAGATTTTGGCATGGCAAGACTGGTTTTAATGGATCAAACTCAAGTAAACACAAATAGAATTGTTGGAACCTATGGATACATGGCACCGGAGTATGCAATGCAAGGACAATTTTCAGTGAAATCGGATGTGTACAGTTTTGGTGTACTGATTCTTGAGATTGTAAGCGGCCAAAAAAACAGTGGAATTAATAATGGGGAAAATATGGAGGATCTACTAAGCTTCGCTTGGAGAAACTGGAAGGAGGGGAAGGCTATAAATGTTGTAGATCCATCACTTAATAGCAATTCACGGAATGAAATGATGAGATGCTTGCATATTGGTTTACTATGTGTTCAAGAAAATTTTCTAGACAGACCAACTATGGCTAACATTATACTGATGCTTAATAGTCATTCTCTGAGTCTCCCTATTCCTGCAGAACCAGCATTTTATGTGAACAGTAGAACTAGAAGCCTTCCAGAGATGCAGTCATGGGAATATAATTCAAGGGAAACAGGATCAAGTGAACCGATACTTAAATCAGTTCAGGAATCAGAAAATGAAGCTTCAATCACTGAGTTATACCCTCGCTAA	2007	0.4111	MAVVSCMLIIFLCFPFLKFVSVATAQKHVCDNGNGNYTANSTYSSNLNTLLSTLSSNTQINYGFYNFSYGQNSDIANAIGLCRGDVESERCRSCLKNSTLDIQHRCPNQKNAILWSDLCMLRYSNETIFHKMETSPGYYWWNLENVTELNQFSQVLGNLMKRLRGIAASGDSRRKYAAAENATGLNFQTIYGAVQCTPDLSQQECNQCLEGAISEIPNCCDDKVGGRVLRPSCNLRFETYRFYGTETTLDPVPEAPPPSNTTSSKESGNTTIIVIAVVVPTVVVVILLICLLLYLRRLKARKNLAVKEEQDDEDEIKIVESLHFNFDAIRVATEDFSDSKRLGQGGFGAVYWGRLPNGQIIAVKRLSRDSGQGDTEFKNEVLLVVKLQHRNLVRLLGFCLEGRERLLIYEFVPNKSLDYFIFDPAMKAQLDWEKRYKIIRGIARGLLYLHEDSQLRIIHRDLKASNILLDDEMNPKIADFGMARLVLMDQTQVNTNRIVGTYGYMAPEYAMQGQFSVKSDVYSFGVLILEIVSGQKNSGINNGENMEDLLSFAWRNWKEGKAINVVDPSLNSNSRNEMMRCLHIGLLCVQENFLDRPTMANIILMLNSHSLSLPIPAEPAFYVNSRTRSLPEMQSWEYNSRETGSSEPILKSVQESENEASITELYPR*	669

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra8g0902	668	SMART	serkin_6	336	612	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra8g0902	668	Gene3D	Transferase(Phosphotransferase) domain 1	412	613	-	-
	Vra8g0902	668	Gene3D	Phosphorylase Kinase; domain 1	298	411	-	-
	Vra8g0902	668	Pfam	Protein tyrosine and serine/threonine kinase	339	604	IPR001245	GO:0004672\|GO:0006468
	Vra8g0902	668	MobiDBLite	consensus disorder prediction	636	661	-	-
	Vra8g0902	668	SUPERFAMILY	Protein kinase-like (PK-like)	321	638	IPR011009	-
	Vra8g0902	668	CDD	STKc_IRAK	342	607	-	-
	Vra8g0902	668	ProSiteProfiles	Gnk2-homologous domain profile.	134	242	IPR002902	-
	Vra8g0902	668	MobiDBLite	consensus disorder prediction	636	668	-	-
	Vra8g0902	668	ProSiteProfiles	Protein kinase domain profile.	336	612	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra8g0902	668	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	457	469	IPR008271	GO:0004672\|GO:0006468
	Vra8g0902	668	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	6	642	-	-
	Vra8g0902	668	Gene3D	-	22	127	IPR038408	-
	Vra8g0902	668	Gene3D	-	135	242	IPR038408	-
	Vra8g0902	668	ProSiteProfiles	Gnk2-homologous domain profile.	25	128	IPR002902	-
	Vra8g0902	668	ProSitePatterns	Protein kinases ATP-binding region signature.	342	364	IPR017441	GO:0005524
	Vra8g0902	668	Pfam	Salt stress response/antifungal	145	240	IPR002902	-
	Vra8g0902	668	Pfam	Salt stress response/antifungal	30	125	IPR002902	-
	Vra8g0902	668	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	6	642	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra8g0902	Vra-Chr8	20068924	20071834	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra8g0902	7	668	Receptor kinase-like Gene Family	AT4G21410	49.202	0.0	640

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vra8g0902		PK_Tyr_Ser-Thr	2.6e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra8g0902	-		-	vra:106771832	926.776