Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0898 ATGGGTGTCTCACGATATTTTCATGACGTTCTAGGATTGTCCGTGTTGGAACTTACGACAATCTGCGTGAACCTGACTTTTGTTCTTTTGTTTCTCTTTGTTGTCTCGGTGAGGCGTGCTATTGTGTACCAGGGTGGATTGCGATTTGGTAAAAATGGGAACAGTGGCAATGCCAGCCCAATCTGTAGTGTCATTGATGAAGAAACGCGTGGTGTTAGAATCAGTTTGGTGTTCAAGTTGTCAGTGGTGTCTTGTTTCTATATTTTCTTTGTGCATGTTTTGGCCTTGGGGTTCGAAGGGTGTGCTTTAGTTTGGGGTGAGGCTGACGTGGATTTGTCTCTTCTCTCTGTGCCTGCTGCACAGGGTTTGGCTTGGTTTGTGTGGAGCTTCTCGGTCTTGCATTGCAAGTTCAAGGGGTCAGAGAGGTTTCCAGTTTTGTTGAGAGTTTGGTGGTTTTTGTCCTTTGTTATTTGCTTGTGTACTTTGTACGTTGATGGGAGAGGGTTTTGGGAGGATGGTTCTCAACATCTATGTTCTCGTGCTGTCTCAAATGTTGCTGTCACTCCACCTCTTGCATTTTTGTTTGTGGTTGCAGTCAGGGGTGACACTGGTATAAGAGTTTGTCGGAACTCTGATCTTCAAGAGCCATTGCTTGTTGAGGAGGAACCCGGGTGTCTCAGGGTTACTCCTTATAGAGATGCTGGAATTTTTAGTTTGGTCACTCTTTCTTGGCTGAATCCACTTCTTTCAATTGGTGCTAAGAGACCACTTGAGCTTAAGGACATTCCACTTGTTGCACCAAGAGACAGAGCCAAGACTAGTTATAAGATTCTGAATTCTAATTGGGAGAGATTGAAGGCTGAAAATGACAATCCCTCTAAGCAGCCTTCTTTGGCTTGGGCGATTCTCAAGTCATTCTGGAAAGAGGCAGCTTTGAATGCTATCTTTGCTGGTTTGAATACTTTGGTGTCATATGTAGGTCCGTACATGATAAGTTACTTTGTGGATTACTTGGGTGGCAAGGAGACCTTCCCCAATGAGGGATATACCCTTGCTGGTATATTTTTTGCGGCGAAGCTTGTGGAGACTGTGACAACTAGGCAGTGGTATCTAGGAGTGGATATCTTGGGCATGCATGTTAGATCAGCCCTAACTGCTATGGTATATAGAAAGGGACTCAGACTCTCAAGCTCTGCCAAGCAAAGTCACACAAGTGGGGAGATTGTCAACTACATGGCTGTTGATGTTCAGAGGGTCGGGGACTTCTCTTGGTACCTTCATGATATGTGGATGCTTCCACTGCAGATTGTTCTTGCCCTTTTTATTCTGTATAAGAATGTCGGAATTGCTTCTATCGCAACATTGATTGCTACAATCGTTTCCATTGTTGTCACGGTTCCTGTGGCTAGGATACAAGAAGATTATCAGGACAAATTGATGGCTGCAAAGGATGAAAGGATGAGAAAGACATCAGAGTGTCTTAGGAATATGAGGATTCTCAAGCTCCAAGCTTGGGAGGACAGATACCGATTGAAGTTGGAGGAAATGCGTGGAGTAGAGTACAAGTGGCTAAGGAAAGCACTCTACTCTCAGGCTTTCATAACTTTCATATTCTGGAGCTCCCCTATATTTGTTTCAGCTGTCACTTTTGCTACTTGCATATTGTTGGGGGGCCAGTTGACTGCAGGTGGCGTTCTCTCTGCTCTAGCTACTTTCAGAATTCTCCAAGAACCTCTGAGGAATTTTCCTGACTTGGTGTCAACCATGGCTCAGACAAAAGTTTCTATTGATCGCATATCTACTTTCCTTCAGGATGAAGAATTGCAGGAAGATGCAACTATCATCATGCCGCGTGGCCTTTCTAACTTGGCCGTAGAAATCAGGGATGGTGTCTTCTGCTGGGACTCTTCTTTGCCTAGGCCTACTCTATCAGGAATACGTATGAAAGTGGAAAAGGGAATGAGCGTGGCTGTTTGTGGCATGGTCGGTTCTGGGAAGTCAAGTTTTCTTTCTTGCATTCTTGGAGAGATTCCCAAGCTGTCTGGTGAAGTAAAAGTGTGTGGATCTGTTGCATACGTCCCCCAATCTGCTTGGATTCAATCAGGAAATATAGAAGAAAATATCCTGTTTGGCTCCCCAATGGATAAAGCAAAGTACAAGAATGTTCTTCATGCTTGTTCACTGAAAAAGGATCTAGAGCTTTTCTCACATGGAGACCAGACAATCATTGGTGACAGAGGTATAAATTTGAGTGGTGGCCAGAAGCAGCGCGTTCAGCTTGCACGAGCACTCTACCAAGATGCTGATATTTACCTCCTTGATGATCCCTTCAGTGCAGTTGATGCCCACACTGGATCGGAATTATTTAGGGAGTATGTATTGACAGCACTAGCAAACAAGACAGTTATTTTTGTGACTCATCAAGTTGAATTTCTCCCTTCTGCTAATATGATACTGGTTCTTAAAGAAGGTCATATCATACAGGCAGGAAAATATGATGATCTTTTACAAGCAGGAACAGATTTCAAAACTCTAGTTTCGGCTCACCATGAAGCAATAGAGGCCATGGATATTCCTAATCACTCAGTCGATTCAGATGAAAATGTACCTTTGGAGGAATCTACTATGAACAGTAAGACATCCATTTCTTCTGCAAATGATATTGACAGTTTGGCAAAGGAAGTTCAAGAGGGATCATCGGATCAGAAAGTAGTTAAGGAACAGAAGAAAGCAAAACGCTCAAGGAAAAAACAGCTTGTTCAGGAAGAGGAGAGGGTTAGAGGTAGAGTCAGCATGATGGTCTACTGGTCGTACATGGCTGCAGCATATAAAGGTTTATTGATTCCCCTCATAATCATGGCACAAACATTATTTCAGTTCCTCCAGATTGCTAGTAATTGGTGGATGGCTTGGGCAAATCCTCAAACTGACGGAGACCAGCCCAAAGTAACACCTACTGTTCTTCTTCTTGTGTACATGGCCCTCGCTTTTGGGAGCTCATGGTTTATTTTTGTAAGGGCTGTTCTCGTGGCTACATTTGGTCTAGCAGCTGCACAGAAGCTTTTTTTCAACATGCTTAGAAGCATTTTCCATGCACCAATGTCTTTCTTTGACTCTACACCAGCTGGGAGGATCTTGAATCGTGTTTCAATTGATCAAAGTGTGGTAGATCTTGACATTCCATTTAGACTTGGAGGGTTTGCTTCATCAACAATACAGCTTATTGGAATTATTGCTGTAATGACAGATGTAACATGGCAAGTTTTGCTCCTTGTAGTCCCAATAGCTATTATTTGTTTGTGGATGCAGAAATACTACATGGCTTCCTCAAGGGAGCTGGTACGCATTGTGAGCATCCAGAAATCTCCAATTATACATCTTTTTGGTGAATCAATTGCGGGAGCAGCCACCATTAGAGGGTTTGGACAAGAAAAAAGGTTCATGAAGAGGAATCTCTATCTTCTGGATTGTTTTGCACGACCCTTCTTCTGTAGTCTTGCAGCTATTGAGTGGCTCTGCCTGCGGATGGAATTACTTTCAACCTTTGCATTTGCTTTCTGCCTGGTATTACTTGTTAGCCTTCCCCATGGAAGTATTGATCCCAGCATGGCTGGACTTGCTGTAACGTATGGCCTAAATTTAAATGCACGTCTATCAAGATGGATACTCAGTTTTTGCAAACTAGAAAATAAAATTATATCCATTGAAAGAATTTATCAGTACAGCCAAGTTCCTACTGAAGCGCCAGCAGTTATTGAGGATTCTCGCCTTCCATCCTCATGGCCAGAGAATGGGACAATCCAATTAATTGATCTGAAGGTACGTTACAAGGAAAATCTTCCTGTGGTGCTTCATGGAGTATCCTGCACATTTCCTGGTGGGAAGAAGATTGGAATAGTTGGTCGTACTGGCAGTGGCAAATCTACGTTGATTCAAGCACTATTTCGTTTGGTTGAACCAGAAGCAGGGAGTATCTTCATAGACAACATTAATATTTCAGCTATTGGCCTTCATGACCTTAGAAGCCATTTGAGTATCATACCACAAGATCCAACCTTATTTGAAGGCACCATTCGAGGAAATCTCGATCCACTTGAAGAGCACTCTGATAAAGAGATTTGGGAGGCCCTAGATAAGTCTCAACTTGGTGAGATCATCCGTGAAACAGGGCGCAAGCTTGATATGCCAGTGCTGGAAAATGGAGATAATTGGAGTGTAGGGCAGCGGCAACTTGTTTCTTTGGGTCGAGCTCTGCTGAAGCAATCAAAGATACTTGTACTTGATGAAGCAACTGCATCAGTCGATACTGCTACTGATAATCTTATACAGAAGATAATTAGAAGGGAGTTTAGAGATTGCACTGTCTGCACTATTGCACATCGTATTCCTACTGTTATTGACAGTGATCTGGTGCTGGTACTCAGTGATGGTCGAGTTGCAGAGTTTGACACTCCACCAAGGCTATTAGAGAACAAGTCATCTATGTTTTTGAAGTTGGTGACTGAGTATTCATCACGGTCAAGTGGCATACCAGACTTTTAA 4542 0.4311 MGVSRYFHDVLGLSVLELTTICVNLTFVLLFLFVVSVRRAIVYQGGLRFGKNGNSGNASPICSVIDEETRGVRISLVFKLSVVSCFYIFFVHVLALGFEGCALVWGEADVDLSLLSVPAAQGLAWFVWSFSVLHCKFKGSERFPVLLRVWWFLSFVICLCTLYVDGRGFWEDGSQHLCSRAVSNVAVTPPLAFLFVVAVRGDTGIRVCRNSDLQEPLLVEEEPGCLRVTPYRDAGIFSLVTLSWLNPLLSIGAKRPLELKDIPLVAPRDRAKTSYKILNSNWERLKAENDNPSKQPSLAWAILKSFWKEAALNAIFAGLNTLVSYVGPYMISYFVDYLGGKETFPNEGYTLAGIFFAAKLVETVTTRQWYLGVDILGMHVRSALTAMVYRKGLRLSSSAKQSHTSGEIVNYMAVDVQRVGDFSWYLHDMWMLPLQIVLALFILYKNVGIASIATLIATIVSIVVTVPVARIQEDYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRLKLEEMRGVEYKWLRKALYSQAFITFIFWSSPIFVSAVTFATCILLGGQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSIDRISTFLQDEELQEDATIIMPRGLSNLAVEIRDGVFCWDSSLPRPTLSGIRMKVEKGMSVAVCGMVGSGKSSFLSCILGEIPKLSGEVKVCGSVAYVPQSAWIQSGNIEENILFGSPMDKAKYKNVLHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFREYVLTALANKTVIFVTHQVEFLPSANMILVLKEGHIIQAGKYDDLLQAGTDFKTLVSAHHEAIEAMDIPNHSVDSDENVPLEESTMNSKTSISSANDIDSLAKEVQEGSSDQKVVKEQKKAKRSRKKQLVQEEERVRGRVSMMVYWSYMAAAYKGLLIPLIIMAQTLFQFLQIASNWWMAWANPQTDGDQPKVTPTVLLLVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFFNMLRSIFHAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASSTIQLIGIIAVMTDVTWQVLLLVVPIAIICLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFAFAFCLVLLVSLPHGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQVPTEAPAVIEDSRLPSSWPENGTIQLIDLKVRYKENLPVVLHGVSCTFPGGKKIGIVGRTGSGKSTLIQALFRLVEPEAGSIFIDNINISAIGLHDLRSHLSIIPQDPTLFEGTIRGNLDPLEEHSDKEIWEALDKSQLGEIIRETGRKLDMPVLENGDNWSVGQRQLVSLGRALLKQSKILVLDEATASVDTATDNLIQKIIRREFRDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPPRLLENKSSMFLKLVTEYSSRSSGIPDF* 1514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0898 1513 ProSitePatterns ABC transporters family signature. 750 764 IPR017871 GO:0005524
Vra8g0898 1513 SMART AAA_5 652 833 IPR003593 -
Vra8g0898 1513 SMART AAA_5 1293 1478 IPR003593 -
Vra8g0898 1513 MobiDBLite consensus disorder prediction 896 917 - -
Vra8g0898 1513 CDD ABCC_MRP_domain2 1265 1485 - -
Vra8g0898 1513 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 64 1513 - -
Vra8g0898 1513 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1267 1501 IPR003439 GO:0005524
Vra8g0898 1513 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 311 591 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra8g0898 1513 Gene3D ABC transporter type 1, transmembrane domain 909 1248 IPR036640 GO:0005524|GO:0016021
Vra8g0898 1513 Gene3D ABC transporter type 1, transmembrane domain 279 608 IPR036640 GO:0005524|GO:0016021
Vra8g0898 1513 CDD ABC_6TM_ABCC_D1 312 599 IPR044746 GO:0140359
Vra8g0898 1513 CDD ABCC_MRP_domain1 625 824 - -
Vra8g0898 1513 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 64 1513 - -
Vra8g0898 1513 Gene3D - 620 853 IPR027417 -
Vra8g0898 1513 Gene3D - 1250 1503 IPR027417 -
Vra8g0898 1513 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 950 1220 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra8g0898 1513 SUPERFAMILY ABC transporter transmembrane region 936 1249 IPR036640 GO:0005524|GO:0016021
Vra8g0898 1513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 622 847 IPR027417 -
Vra8g0898 1513 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 625 848 IPR003439 GO:0005524
Vra8g0898 1513 CDD ABC_6TM_ABCC_D2 948 1242 IPR044726 GO:0140359
Vra8g0898 1513 Pfam ABC transporter 643 777 IPR003439 GO:0005524
Vra8g0898 1513 Pfam ABC transporter 1284 1432 IPR003439 GO:0005524
Vra8g0898 1513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1258 1497 IPR027417 -
Vra8g0898 1513 SUPERFAMILY ABC transporter transmembrane region 300 607 IPR036640 GO:0005524|GO:0016021
Vra8g0898 1513 Coils Coil 905 925 - -
Vra8g0898 1513 Pfam ABC transporter transmembrane region 314 579 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra8g0898 1513 Pfam ABC transporter transmembrane region 951 1194 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0898 Vra-Chr8 20006923 20015336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0898 625 841 Calmodulin-binding Proteins AT2G36910 31.356 1.21e-21 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0898 - - gmx:100781010 2780.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0898 8 20006923 20015336 Vra8g0898 8 20006923 20015336 ECH