Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0879 ATGGAAGAAGGGTTGTGCGAAAACTCAGTTCCTGGTTCTGGTTCTGGTTTGGTTGATAAAACTAGGATTGTAGAGGTTAAACCCCTGCGTAGTTTGGCACCTGTGTTGCCAAAATCCCTTCAACTTTCTATCTCTGGAAGGTACCCATCTGGGTTTCCTCCATTTGTTTTGTTCGGAGAACCCGTAGAGTCTCAGCCATCACCTACTCCCATTCCAGCTCCAATAAGGTCCTATAGGAAGCCATCAGATGAAGAAGAAACCCCTCATGAAGTCAATGGAGACACTTCATCACCTGTTGAGGGTGTAAATGGTGAGAGTGTCGACGATAGTCCAAACCGTCCTTCGCAGCCTATGAAGAGCTGCAAAACATCCCAAAAAAGGCGTAAGAAAACTCAGGATTTTGGTGGCAGTTCTTCGGTTGGTGTTATTAGTATGGCCCAAAGGGATGATGGTGATCGGGAAGTGGTTAATCTTGTGCTCATGAATTTTGATTCTCTTCGGAGAAGGTTCTGCCAACTTGAAGATTCCAAGGAGTTGAACACAATGATGGGAACCAAGCGCCCGGATTTAAGAGCAACCAATGTGATGACAAGCAAAGTGTTTCGCACAAATATGAGGAGGAGAGTAGGAGCAGTGCCTGGGGTTGAGATTGGGGATATTTTCTTTTTGCGGATGGAAATGTGTCATGTGGGTTTGCATGCGCAGTCAATGAGTGGAATTGACTACATGAGCGTCAAGGATGAGTTTCAGGAGGAAACGGTGGCTTTAAGCATTGTCTCGTCAGGAGTATATGATAATGATGCAGAGGAGGAGGATATTTTAGTTTATACTGGCCAAGGTGAGAACTTCAACAAGAAAGACAAGCATGTGGTTGATCAGAAGCTTCAAAGGGGTAATCTTGCTTTAGATAGAAGTACACACCGACAGAATGAAGTAAGAGTCATCCGGGGCTTGAGAGATGCGGTGAATAAACATGCAAAATTCTATGTCTATGATGGTCTGTATAAAATCCAGGGTTCTTGGATAGAAAAAGGGAAGTCTGGTGGTGGTGTATTCAAGTACAAGTTTGTTCGATTACCTGGGCAACCTAGTGCTTTTGCTGTTTGGAAGTCAATTCAGAAGTGGAAGAGAGGTTCATCTTCAAGGACTGGTCTTATTCTTGCAGATCTCACCACAGGAGTCGAGACTATTCCTGTATCACTTGTCAATGATGTCGACAACGAGAAGGGGCCTTCTTTTTTCACCTATTCCAATTCTCTCAGAGATTCAAAACCATTCAGTATGGTGCAATCTTCATATGGCTGCAACTGTAACAAAACATGTGTCCCTGGAGATTTGAGCTGCTCTTGCATTCAAAGAAATGAAGGTGACTTCCCATATATTGCAAATGGTGTTCTAGTCAGTCGGAGACCATTGGTTCATGAGTGTGGCCCAATGTGTAAGTGCTTTCCTAACTGCAAGAATCGAGTATCGCAGACAGGTTTGAAGCACCAAATGGAAGTTTTCAAAACAAAAGATAGAGGGTGGGGACTTCGATCCCTTGATCCTATACGTGCTGGTACTTTTATTTGTGAGTATGCAGGAGAAGTAATTGATAGAGCCAAGGTAAATAAGAATGGGGGATATAATGATGAGTATGTTTTTGATACTAGTCGTATTTACAATTCATTCAAATGGAATTATGAGCCTAGCTTATTGGACGAAATAAGCTCCTCTAGTGAAGATTATACTATACCCTCTCCTCTAATTATCAGTTCTAAAAATTTTGGAAATGTGGCTAGATACATGAATCATAGTTGCTCCCCAAATGTTTTCTGGCAACCAGTCTTGTACGCAGAAAATAATCAATACTTTCTTCACATTGCATTTTTTGCCCTTAGACACATTCCTCCAATGGCAGAGTTAACATATGATTATGGATGTTCTGATCATGCTGATGGTAGTAGTGCACCACAAGGGAGAAAGAAATGCTTGTGTGGATCAGCAAAATGCCGTGGTTCTTTTGGTTGA 2010 0.4234 MEEGLCENSVPGSGSGLVDKTRIVEVKPLRSLAPVLPKSLQLSISGRYPSGFPPFVLFGEPVESQPSPTPIPAPIRSYRKPSDEEETPHEVNGDTSSPVEGVNGESVDDSPNRPSQPMKSCKTSQKRRKKTQDFGGSSSVGVISMAQRDDGDREVVNLVLMNFDSLRRRFCQLEDSKELNTMMGTKRPDLRATNVMTSKVFRTNMRRRVGAVPGVEIGDIFFLRMEMCHVGLHAQSMSGIDYMSVKDEFQEETVALSIVSSGVYDNDAEEEDILVYTGQGENFNKKDKHVVDQKLQRGNLALDRSTHRQNEVRVIRGLRDAVNKHAKFYVYDGLYKIQGSWIEKGKSGGGVFKYKFVRLPGQPSAFAVWKSIQKWKRGSSSRTGLILADLTTGVETIPVSLVNDVDNEKGPSFFTYSNSLRDSKPFSMVQSSYGCNCNKTCVPGDLSCSCIQRNEGDFPYIANGVLVSRRPLVHECGPMCKCFPNCKNRVSQTGLKHQMEVFKTKDRGWGLRSLDPIRAGTFICEYAGEVIDRAKVNKNGGYNDEYVFDTSRIYNSFKWNYEPSLLDEISSSSEDYTIPSPLIISSKNFGNVARYMNHSCSPNVFWQPVLYAENNQYFLHIAFFALRHIPPMAELTYDYGCSDHADGSSAPQGRKKCLCGSAKCRGSFG* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0879 669 Pfam SAD/SRA domain 209 362 IPR003105 -
Vra8g0879 669 Pfam SET domain 508 640 IPR001214 GO:0005515
Vra8g0879 669 Gene3D - 192 378 IPR036987 -
Vra8g0879 669 Gene3D SET domain 379 668 IPR046341 -
Vra8g0879 669 ProSiteProfiles Post-SET domain profile. 653 669 IPR003616 -
Vra8g0879 669 ProSiteProfiles YDG domain profile. 210 358 IPR003105 -
Vra8g0879 669 SMART G9a_1 205 362 IPR003105 -
Vra8g0879 669 MobiDBLite consensus disorder prediction 92 121 - -
Vra8g0879 669 Pfam Pre-SET motif 391 489 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Vra8g0879 669 ProSiteProfiles Pre-SET domain profile. 433 494 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Vra8g0879 669 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 24 669 IPR025794 GO:0016571
Vra8g0879 669 SUPERFAMILY PUA domain-like 192 380 IPR015947 -
Vra8g0879 669 MobiDBLite consensus disorder prediction 61 146 - -
Vra8g0879 669 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 16 667 - -
Vra8g0879 669 SMART preset_2 387 481 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Vra8g0879 669 SMART set_7 497 646 IPR001214 GO:0005515
Vra8g0879 669 ProSiteProfiles SET domain profile. 497 640 IPR001214 GO:0005515
Vra8g0879 669 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 16 667 - -
Vra8g0879 669 SUPERFAMILY SET domain 397 666 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0879 Vra-Chr8 19482406 19502798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0879 19 669 Su(var)3-9 homologs AT1G73100 50.511 0.0 666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vra8g0879 SAD_SRA 3.9e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0879 K24405 - gmx:100800651 1145.18