Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0878 ATGGAGTGGCTTCAGCAATTCCTAAATTTTCTCTTCTTAGCTTCTCTTCTTATCAGCACCACTGCAATTTCAGATCAAACTCCAAAGCATTATGTTGTTTACATGGGAAATTCATCACCCAACAACCAAAGGGTACAAGGCCAAATACCAGAATCAGATCATCTGCAGCTACTGTCATCAATTATTCCAAGTGAAGAAAGTGAGAGGATAGCCCTGATCCACCATTTCAGCCATGCCTTCAGTGGATTCTCTGCCATGCTTACAGAGAGTGAAGCTTCTGCACTGTCTGGTGAGAATGGTGTGGTGTCAGTGTTCCCAGATCCGATGCTTGAGTTGCACACAACACGATCTTGGGATTTCTTGGAGTCAGATTTGGGATTGAAGGCTCCTCATTATGTCACTTCCAAAACCCTAATCCAAAACTCTTCAATTGATTCCATTATTGGTGTCATAGACACAGGGATATGGCCAGAGTCTCCAAGTTTCAGAGATGAGGGTATAGGGGAGATCCCTTCAAGGTGGAAAGGAGTTTGCATGGAGGGTCATGATTTCAAGAAATCCAATTGCAATAGAAAATTGATTGGTGCAAGATTCTACAATATTGAAGCTACACCAGGTAGCAACAAGACTCAAATAGAAGCAAGCAAAGGTTCCCCAAGAGATTCTGTTGGACATGGCACTCACACTGCATCAATTGCAGCTGGTGTTTATGTGAAGAATGCTAGTTATTATGGTTTAGCACTAGGCACAGCAAGGGGTGGTTCACCTTCTACTAGGATTGCTGCTTATAAAACATGCTCAGAAGAAGGATGCTCTGGTGCCACCATTCTAAAGGCTATTGATGATGCTGTAAAGGATGGAGTAGATGTGATCTCCATCTCAATTGGACTCAGCTCACTGTTTCAATCAGACTTTTTGAGTGATCCCATTGCCATTGGAGCATTTCATGCAGAACAAATGGGGGTCATGGTGGTGTGCTCAGCTGGCAATGATGGCCCTGATCCTTTCACAGTTGTGAACACTGCACCATGGATATTTACTATTGCAGCTTCTAATATTGATAGGAACTTCCAATCAACTATTATCCTTGGAAATGGAAAGTATTTCCAAGGTACAGGCATTAACTTCTCAAATCTTACTCATTCAAAGATGCATAACCTTGTCTTTGGAGAGCAAGTAGCTGCCAAATTTGCCCCTGCATCAGAAGCTAGGAATTGTTACCCTGGATCATTAGATTACAACAAAATTGCTGGCAACATTGTTGTTTGTGCTAATGATGATCCAACTGTTGCAAGGCGAATCAAGAAGCTAGTTGTACAAGATGGAAGAGCCATAGGGTTGATACTCATTGATGAGGACAACAGAGATGTTCCCTTTGATGCAGGTGTCTTTCCCTTCACTGAGGTTGGAAATCTTGAAGGACATCAGATCCTACAATACATAAATTCTACCAAGAACCCAACTGCAACAATTCTTCCAACAACAGAAGTTGTTAGATATAAGCCTTCACCAATTGTTGCATCTTTCTCATCCAGAGGTCCTTCAAGCCTTACAGAAAACATTCTCAAGCCGGATGTCATGGCTCCAGGAACTGGCATTTTGGCTGCTATGATTCCTAAAAATAATGACCAGGGAAGTGTTCCAATTGGGAACAAACCATCCTTGTTTGGCATAAAATCTGGTACATCTATGGCTTGCCCACATGTGACAGGTGCAGCAGCATTCATTAAATCAGTACACCGAAATTGGAGTCCTTCAATGATAAAATCAGCATTGATGACAACAGCTACGAATTACAACAACTTGAGGAAGCCTCTCACTAACAGCTCAAACCACATTGCTGACCCACATGAAATTGGAGTTGGTGAAATTAATCCAGTCAAAGCTCTCTACCCTGGATTAGTTTTTGAAACAAACATAAAAGACTATCTTAGATTCCTCTGTTATTTTGGCTATTCACAGAAAAAGGTAAGGTCAATGTTTAAGACCAACTTTGATTGCCCCAAGAACTCCTCTGAAGACCTTATATCCAACATCAATTATCCATCAATATCTATAAGTACACTTAAAAGGCAACAAAAACCAAAAGTGATCACAAGAACAGTTACCAATGTTGGATCCCCTAATGCCACATACACTGCAAAAGTGAGATCACCTGAGGGATTGGTTGTGAAGGTCATCCCCAATAAACTTGTGTTTTCTGAGAGTGTTCAAAGAATTACCTACAAAGTCTCATTCTATGGCAAGGAGGCCAATGGTGGATACAATTTTGGATCTCTAACATGGCTTGATGGCCACCATTATGTTCATACAGTCTTTGCAGTCAAAGTTGAATAA 2337 0.4125 MEWLQQFLNFLFLASLLISTTAISDQTPKHYVVYMGNSSPNNQRVQGQIPESDHLQLLSSIIPSEESERIALIHHFSHAFSGFSAMLTESEASALSGENGVVSVFPDPMLELHTTRSWDFLESDLGLKAPHYVTSKTLIQNSSIDSIIGVIDTGIWPESPSFRDEGIGEIPSRWKGVCMEGHDFKKSNCNRKLIGARFYNIEATPGSNKTQIEASKGSPRDSVGHGTHTASIAAGVYVKNASYYGLALGTARGGSPSTRIAAYKTCSEEGCSGATILKAIDDAVKDGVDVISISIGLSSLFQSDFLSDPIAIGAFHAEQMGVMVVCSAGNDGPDPFTVVNTAPWIFTIAASNIDRNFQSTIILGNGKYFQGTGINFSNLTHSKMHNLVFGEQVAAKFAPASEARNCYPGSLDYNKIAGNIVVCANDDPTVARRIKKLVVQDGRAIGLILIDEDNRDVPFDAGVFPFTEVGNLEGHQILQYINSTKNPTATILPTTEVVRYKPSPIVASFSSRGPSSLTENILKPDVMAPGTGILAAMIPKNNDQGSVPIGNKPSLFGIKSGTSMACPHVTGAAAFIKSVHRNWSPSMIKSALMTTATNYNNLRKPLTNSSNHIADPHEIGVGEINPVKALYPGLVFETNIKDYLRFLCYFGYSQKKVRSMFKTNFDCPKNSSEDLISNINYPSISISTLKRQQKPKVITRTVTNVGSPNATYTAKVRSPEGLVVKVIPNKLVFSESVQRITYKVSFYGKEANGGYNFGSLTWLDGHHYVHTVFAVKVE* 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0878 778 CDD Peptidases_S8_3 110 597 IPR034197 -
Vra8g0878 778 ProSitePatterns Serine proteases, subtilase family, serine active site. 561 571 IPR023828 -
Vra8g0878 778 Gene3D - 354 498 - -
Vra8g0878 778 Gene3D Peptidase S8/S53 domain 146 643 IPR036852 GO:0004252|GO:0006508
Vra8g0878 778 Pfam Fibronectin type-III domain 678 775 IPR041469 -
Vra8g0878 778 PRINTS Subtilisin serine protease family (S8) signature 143 162 IPR015500 -
Vra8g0878 778 PRINTS Subtilisin serine protease family (S8) signature 221 234 IPR015500 -
Vra8g0878 778 PRINTS Subtilisin serine protease family (S8) signature 560 576 IPR015500 -
Vra8g0878 778 Pfam Peptidase inhibitor I9 30 113 IPR010259 -
Vra8g0878 778 PANTHER CO(2)-RESPONSE SECRETED PROTEASE 67 774 - -
Vra8g0878 778 ProSiteProfiles Serine proteases, subtilase domain profile. 117 630 - -
Vra8g0878 778 Pfam Subtilase family 146 601 IPR000209 GO:0006508|GO:0008236
Vra8g0878 778 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 67 774 IPR045051 -
Vra8g0878 778 CDD PA_subtilisin_like 360 491 - -
Vra8g0878 778 Gene3D - 647 777 - -
Vra8g0878 778 SUPERFAMILY Subtilisin-like 145 634 IPR036852 GO:0004252|GO:0006508
Vra8g0878 778 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 17 113 IPR037045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0878 Vra-Chr8 19466384 19480630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0878 31 775 Subtilisin-like Serine Gene Family AT1G20150 43.627 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0878 K25898 - gmx:100781053 1331.62