Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0863 ATGGCGAACCAACCCGAGTCCTCCGATGCTAAGGGAACAAAGAGAGATTTCAGTACCGCGATCTTGGAGCGCAAGAAGGCNCCCAACCGACTCGTCGTTGACGAAGCCGTAAACGATGACAACTCCGTCGTCGCNCTCCACCCTGATACCATGGATAAGCTCCAGCTTTTCCGCGGAGATACAATTCTTCTCAAGGGCAAGAAGAGGAAGGATACTGTCTGTATTGCCCTTGCCGACGATACCTGTGAGGAGCCCAAGATACGGATGAACAAGGTCGTCAGGAGCAACCTTAGGGTTAGACTCGGTGACGTTGTCTCCGTTCACGCATGCCCTGATGTTAAGTACGGAAAGAGAGTGCACATTCTTCCCGTCGATGACACCATTGAGGGCGTTACTGGAAATCTCTTTGATGCTTACTTGAAGCCTTATTTCCTTGAGGCATATAGACCAGTGAGGAAAGGTGACTTGTTTCTTGTGAGAGGGGGGATGAGAAGTGTGGAGTTCAAGGTTATTGAAACCGATCCTGCAGAGTATTGTGTCGTTGCTCCTGACACTGAGATCTTCTGTGAGGGAGAGCCTGTTAAAAGGGAAGATGAGAATCGGTTAGACGAGGTTGGTTATGACGATGTTGGTGGTGTTAGAAANCANATGGCACAGATTAGGGAACTGGTGGAACTGCCATTGAGGCATCCACAGNTGTTCAAATCTATTGGTGTTAAGCCACCTAAGGGAATTCTGCTATATGGACCCCCCGGGTCTGGTAAGACTTTGATTGCTCGAGCTGTTGCAAATGAAACTGGAGCCTTCTTTTTCTGCATTAATGGTCCTGAGATCATGTCAAAATTGGCTGGTGAGAGTGAAAGCAATCTGAGGAAGGCATTTGAAGAAGCTGAGAAGAATGCGCCCTCTATTATCTTCATTGATGAGATAGATTCGATAGCTCCAAAGAGGGAGAAGACTCACGGGGAAGTTGAGAGGAGAATTGTTTCCCAGCTCTTGACTCTCATGGACGGTCTTAAATCACGTGCTCATGTAATTGTTATTGGAGCCACAAATCGTCCCAATAGCATTGACCCTGCCCTTAGGAGGTTTGGTAGGTTTGATCGGGAGATAGATATTGGCGTTCCAGATGAGGTTGGTCGCCTTGAGGTTCTTCGCATACACACAAAAAATATGAAGCTTTCTGATGATGTCGATTTAGAAAGGATTGCTAAGGACACACATGGATATGTTGGTGCTGATCTGGCTGCTTTGTGTACTGAAGCTGCACTTCAATGCATCAGAGAGAAAATGGACGTCATTGACTTGGAGGACGAGTCCATTGACGCCGAGATACTAAACTCAATGGCAGTGTCAAATGAGCATTTCCAGACTGCTCTCGGAACAAGCAATCCTTCTGCCCTCCGAGAAACAGTCGTTGAAGTGCCCAACGTCAGCTGGGAAGATATTGGTGGTCTTGAGAATGTGAAGAGAGAACTTCAAGAGACTGTTCAATATCCAGTGGAACACCCTGAGAAATTTGAGAAGTTTGGAATGTCACCTTCAAAGGGGGTTCTTTTCTATGGGCCTCCCGGTTGTGGTAAAACCCTTTTGGCAAAGGCCATTGCCAATGAATGCCAGGCGAACTTCATCAGTGTCAAAGGTCCTGAACTACTTACCATGTGGTTTGGAGAAAGTGAGGCTAATGTGAGGGAAATTTTTGACAAAGCTCGTGGTTCTGCTCCATGTGTTCTATTTTTTGATGAACTTGACTCTATTGCAACTCAGAGGGGCAGCAGCGTAGGAGATGCTGGTGGTGCTGCTGATAGGGTTTTGAATCAATTGCTTACAGAGATGGATGGTATGTCAGCAAAGAAAACCGTGTTCATCATTGGGGCCACTAATCGACCAGACATTATAGATCCTGCTCTTCTGCGACCGGGCCGTCTGGATCAATTGATTTATATCCCACTNCCAGATGAGGATTCCCGTCATCAGATATTTAAAGCTTGTTTGAGAAAGTCTCCTGTTTCAAAAGATGTTGACCTCAGAGCTCTGGCCAAGTATACTCAGGGCTTCAGTGGTGCAGATATCACTGAAATTTGCCAGCGTGCATGCAAGTATGCTATAAGAGAGAACATTGAGAAGGACATTGAGAGAGAGAGGAGGAAAAGAGATAACCCTGAGGCAATGGAAGAGGATATTGAAGAGGAAGAGGTAGCTGAAATCAAGGCAGCTCATTTTGAGGAGTCAATGAAATATGCACGAAGGAGTGTAAGCGATGCTGACATTCGCAAGTACCAGGCATTTGCTCAGACATTGCAGCAGTCAAGAGGGTTTGGATCCGAGTTCAGGTTTTCAGATGCCAGTGCTGGTGGTGCTGGTGCTGGCACTGCATCTGACCCTTTTGCAAGTGCTGGTGGAGCTGACGAGGATGATCTTTACAGTTAG 2430 0.4663 MANQPESSDAKGTKRDFSTAILERKKAPNRLVVDEAVNDDNSVVALHPDTMDKLQLFRGDTILLKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHACPDVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDENRLDEVGYDDVGGVRXXMAQIRELVELPLRHPQXFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDESIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRKRDNPEAMEEDIEEEEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFSDASAGGAGAGTASDPFASAGGADEDDLYS* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0863 809 ProSitePatterns AAA-protein family signature. 621 639 IPR003960 GO:0005524|GO:0016887
Vra8g0863 809 MobiDBLite consensus disorder prediction 779 809 - -
Vra8g0863 809 SUPERFAMILY ADC-like 27 110 IPR009010 -
Vra8g0863 809 Pfam Vps4 C terminal oligomerisation domain 726 765 IPR015415 -
Vra8g0863 809 Pfam Cell division protein 48 (CDC48), domain 2 132 195 IPR004201 -
Vra8g0863 809 Pfam Cell division protein 48 (CDC48), N-terminal domain 30 111 IPR003338 -
Vra8g0863 809 Gene3D - 655 764 - -
Vra8g0863 809 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 5 782 - -
Vra8g0863 809 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 466 IPR027417 -
Vra8g0863 809 Gene3D - 113 209 - -
Vra8g0863 809 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 476 765 IPR027417 -
Vra8g0863 809 SMART CDC48_N_2 30 113 IPR003338 -
Vra8g0863 809 ProSitePatterns AAA-protein family signature. 345 363 IPR003960 GO:0005524|GO:0016887
Vra8g0863 809 SMART CDC48_2_2 130 196 IPR004201 -
Vra8g0863 809 SUPERFAMILY Cdc48 domain 2-like 112 204 IPR029067 -
Vra8g0863 809 Gene3D - 376 467 - -
Vra8g0863 809 Gene3D - 7 112 - -
Vra8g0863 809 CDD AAA 484 651 - -
Vra8g0863 809 Pfam AAA+ lid domain 397 439 IPR041569 -
Vra8g0863 809 Pfam AAA+ lid domain 673 713 IPR041569 -
Vra8g0863 809 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 31 768 IPR005938 GO:0016787
Vra8g0863 809 Gene3D - 468 651 IPR027417 -
Vra8g0863 809 CDD AAA 240 374 - -
Vra8g0863 809 Gene3D - 210 374 IPR027417 -
Vra8g0863 809 PANTHER AAA-FAMILY ATPASE 5 782 - -
Vra8g0863 809 Pfam ATPase family associated with various cellular activities (AAA) 245 374 IPR003959 GO:0005524|GO:0016887
Vra8g0863 809 Pfam ATPase family associated with various cellular activities (AAA) 518 651 IPR003959 GO:0005524|GO:0016887
Vra8g0863 809 SMART AAA_5 514 653 IPR003593 -
Vra8g0863 809 SMART AAA_5 241 377 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0863 Vra-Chr8 18361532 18365672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0863 447 778 Calmodulin-binding Proteins AT3G56690 43.373 6.89e-81 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0863 K13525 - gmx:100799580 1509.97