Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0857 ATGACCTCACAAGTTGTCCTACACAATTTCCCTCACTCCGAAACCAAACCCTCAACAACTGCCACCACCGATTCCCCACCCACTGCGTCGTCACTCGCCGTCACCAAGAGGTCTTCCGCCCTCGTCACGCGCTCCACCAAGGACCGCCACACCAAGGTCAACGGCCGCGGCCGCCGAGTCCGCATGCCTCCGCTCTGCGCCGCGCGCATTTTCCAGCTCACGCGCGAGCTCGGCCACCGCTCCGACGGTGAGACCATCGAGTGGCTCCTCCGCCACGCAGAGCCTTCCATCATTGCAGCCACCGGCTCCGGTACCATCCCCGCTGCTCCCATCTCCTCAGTGGCACCCTCTGTTCCCTCCTCCGAGTCCTCCGTCTCGGTACCGGTGGTCGGCGGCCAGGGAATGTTCTCCGTGGCGCCGCCAAGCTGCCGCCTCGACCTGTCTCCGCCACCGGGGTTGGATTTCGCGGCAACTAACGCCTATCGGCACATGCCGTTCACGGCGCTGCTGTTGCAGCCGTCTGCAGCGGAGGATAACCAGAATGACGAGTCTCTCGGCGAACAATGA 567 0.642 MTSQVVLHNFPHSETKPSTTATTDSPPTASSLAVTKRSSALVTRSTKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGSGTIPAAPISSVAPSVPSSESSVSVPVVGGQGMFSVAPPSCRLDLSPPPGLDFAATNAYRHMPFTALLLQPSAAEDNQNDESLGEQ* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0857 188 ProSiteProfiles TCP domain profile. 46 100 IPR017887 -
Vra8g0857 188 PANTHER TRANSCRIPTION FACTOR TCP16-RELATED 33 126 - -
Vra8g0857 188 MobiDBLite consensus disorder prediction 1 38 - -
Vra8g0857 188 Pfam TCP family transcription factor 45 146 IPR017887 -
Vra8g0857 188 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 33 126 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0857 Vra-Chr8 18171300 18172169 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0857 46 173 TCP Transcription Factor Family AT2G37000 60.938 7.98e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vra8g0857 TCP 2.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0857 - - vun:114191143 298.516