Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0853 ATGAAGTGTTTTCCATTCTACTTTGGAGAGAAGAAGGATGGTCCTAAGAGCTTGCAGTCCATATCGGGTCGGTCCAACATTTCTACTACTGTTGAGGCTGAGATGAGGAGATCTGGTTCTGAATTGAACTCAATGGATGCATCAGACACCAGCACAGACTCCCTTAGGAGAAATGCATTTCCCAGCTTGTCTCAAAGACCCAGCAACCTCAGAGTATTTACTGTGCCCGAACTAAAAACATCCACAAAGAGTTTTAGTCGCTCTATGATGCTTGGAGAGGGTGGGTTTGGGTGTGTCTACAAGGGGTTGATCAAGAGTGTTGATGATCCTTCCACAAGAATTGAAGTTGCTGTTAAACAGCTTGGCAGAAGAGGAATTCAGGGGCACAAGGAATGGGTCACAGAAGTGAATGTTCTGGGTATTGTAGAGCATCCAAATCTGGTGAAACTAGTGGGATACTGTGCTGATGATGATGAAAGAGGAATCCAAAGGCTTCTGGTGTATGAATATATGCCCAACAGAAGTGTGGAACACCATTTATCACCACGATCAGAAACTCCTCTCCCATGGAATAGGAGGTTGAAAATAGCCCAAGATGCTGCTCGTGGCTTAACATACCTGCATGAGGAAATGGATTTTCAGATAATTTTCAGAGATTTCAAATCTTCAAATATTCTTTTGGACGAGCAGTGGAAAGCAAAGCTGTCAGACTTTGGGCTAGCAAGATTGGGACCATCTGATGGGTTGACTCATGTCTCAACAGCGGTAGTTGGAACAATGGGTTATGCAGCTCCAGAGTATGTTCAAACTGGACGTCTTACATCAAAGAGTGATGTATGGAGCTATGGTGTCTTCCTTTATGAGCTCATTACTGGCCGGCGGCCGATTGACAGAAATCGTCCCAAAGGTGAGCAGAAGATGTTGGAATGGATAAGGCCATACCTTTCAGATGGAAGGAAATTTCAATTAATATTGGATCCAAGACTTGAGAGGAAACACCTCTTCAAGTCAGCACAAAAACTTGCTGTAATAGCCAACAAATGCTTGGTAAGAAATCCAAAGAATCGCCCAAAGATGAGTGAAGTGTTACAAATGGTGACTCAGGTTGTGGAGTCTTCAGTGAGTACTAATCCACAGCCACCCTTGAAGGGTGTTGTAGCCTCAGAAGAACCTTCTTCTGAAACGGTGAACAAGAAAATTACCATGGATCAACAACCAGATTGTAATTGGTTAAGGATGTGGAGAGCAAAGTTTTTAAGTACATGGTTGTAG 1272 0.434 MKCFPFYFGEKKDGPKSLQSISGRSNISTTVEAEMRRSGSELNSMDASDTSTDSLRRNAFPSLSQRPSNLRVFTVPELKTSTKSFSRSMMLGEGGFGCVYKGLIKSVDDPSTRIEVAVKQLGRRGIQGHKEWVTEVNVLGIVEHPNLVKLVGYCADDDERGIQRLLVYEYMPNRSVEHHLSPRSETPLPWNRRLKIAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDEQWKAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYVQTGRLTSKSDVWSYGVFLYELITGRRPIDRNRPKGEQKMLEWIRPYLSDGRKFQLILDPRLERKHLFKSAQKLAVIANKCLVRNPKNRPKMSEVLQMVTQVVESSVSTNPQPPLKGVVASEEPSSETVNKKITMDQQPDCNWLRMWRAKFLSTWL* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0853 423 MobiDBLite consensus disorder prediction 374 396 - -
Vra8g0853 423 ProSitePatterns Protein kinases ATP-binding region signature. 91 119 IPR017441 GO:0005524
Vra8g0853 423 Gene3D Transferase(Phosphotransferase) domain 1 171 380 - -
Vra8g0853 423 Gene3D Phosphorylase Kinase; domain 1 58 170 - -
Vra8g0853 423 ProSiteProfiles Protein kinase domain profile. 85 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0853 423 PANTHER KINASE 1B 12 408 - -
Vra8g0853 423 SUPERFAMILY Protein kinase-like (PK-like) 61 366 IPR011009 -
Vra8g0853 423 MobiDBLite consensus disorder prediction 36 61 - -
Vra8g0853 423 PANTHER OS01G0588500 PROTEIN-RELATED 12 408 - -
Vra8g0853 423 CDD STKc_IRAK 91 368 - -
Vra8g0853 423 Pfam Protein kinase domain 87 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0853 Vra-Chr8 18040898 18044971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0853 1 363 Glycoside Hydrolase AT3G07070 43.316 2.66e-93 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra8g0853 Pkinase 6.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0853 - - gmx:100305438 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0423 3 4927154 4934021 Vra8g0853 8 18040898 18044971 PCT