Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0850 ATGCTTCAGATCATTGGTTCTTCTTCCCATGCCACAATTATATATACCTTATCACTTACCACCTCAAACACTCACTGCACTTTTAATCATCTTTATCTCTCTCTCTTCGCGCTCTCTCTCTCCATCTTGCAGGAAACTATGAAGTCAAGATTTCTCAGAGGGTGCCTCAACAAGTGCAAGAAAATGTGCCTCAACAAGTGCATATCTTGCGAGGAATGCTGTGAACGGGCTTGGTGGTGTTGTTTGCATGAAGGTTGTTCAGATATTCCAAGTGATGTTCCAAAGGGTCACTTGGTTGTGTATGTGGGAGAGAAGCACAAGAGATATGTGATAAAGATTGGTTTGCTCCATCATCCCCTCTTCAGGGCCTTGTTGGATCAAGCTCAGGAAGAGTACGATTTCATTGCTGACTCAAAACTCTGCATTCCCTGCGATGAACACCTCTTTCTCAGTGTCCTTCGATGTGCTACCTCCCCACAGAACCAACCAGTCTGTCTGTGTCTCTGA 507 0.4477 MLQIIGSSSHATIIYTLSLTTSNTHCTFNHLYLSLFALSLSILQETMKSRFLRGCLNKCKKMCLNKCISCEECCERAWWCCLHEGCSDIPSDVPKGHLVVYVGEKHKRYVIKIGLLHHPLFRALLDQAQEEYDFIADSKLCIPCDEHLFLSVLRCATSPQNQPVCLCL* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0850 168 Pfam Auxin responsive protein 72 155 IPR003676 GO:0009733
Vra8g0850 168 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 48 168 IPR003676 GO:0009733
Vra8g0850 168 PANTHER AUXIN-RESPONSIVE FAMILY PROTEIN 48 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0850 Vra-Chr8 17954509 17955454 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0850 76 158 Calmodulin-binding Proteins AT4G34750 46.067 7.89e-21 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0850 K14488 - gmx:100812927 217.238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0850 8 17954509 17955454 Vra8g0850 8 17954509 17955454 ECH
Vra3g0421 3 4912550 4922802 Vra8g0850 8 17954509 17955454 PCT