Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0832 ATGGACAAATGCTCGGAGGCTGCATCTCCATCTTGCAGAGGCAGATCCAAGAAACCCAATCTGCATAGCTCCAAGGTCCAATCGCCAAGCCCCGTTCGCTTCAGCTCCCAGACGCCGGAGAAACCGCCACAGCGGATCCGTAACCGCGGCGTCGCGCTCTCTATCGCTGACATAAGGAAAGCTGGCAAAGGTTTACAGGAAATGAACCGACGCAGTGAAACGACATCGTCGCAGCAGAGCAAGAGTGTGAGGAGACAGATCTCACTGTGGCCTTCTTCTCCCAGTAAATCCAAGATTACTGATGATGAATCCTCCAAGCTTCCCGAAAAATATGAGATTTTGGATCAATTCTTCGATCGTTTGGATACTTTGATTTCAATGTTCCGCCTCAAAGGGAAGACTCCATCCTTTACAGAGATCAGTTCTAGAATTGAATCTTTAACTGACAGGAGGTTTACTCATGGGCATCTAGCCCAATTGAAATATATCTTGCCTGAGGCTATTGTTCTTAAGAAGTTTCTTGTGCATGATGAACGGACTTGTTGTATGAAGCCGGATATTCATATTTCTTTAAACCCTGAAGCGGTAGAGTCTGATGCAAAAGGGCACCCTCAACGTAGGAGAGTGTCGTTGAAGAAGTTGTTTCAGTCCCGAGTAAGGGATTTTTTGGAATCTCATCCCGAGGTTGATGAAATTCCAGAAGGAACATTGCCTGAGCCATTCAATCGCCCAAAGAAAGATAATATTTTGGACATGTTAGAAACTCGTCTCCCAACGAAATTGTCAACCTGCATGCGCTACAATGACATTGTCAATAATACAGAGTCTGGTGACATAGATGAAAAATTGTTAGTACCTATCAAGACATCAGTTGAGTTGCCTAATGAGCATCTGAAAGCACCTTCTGTCATTGCTCCATCCTTTAGAGCTCGATTTTCTTTGAAAGTTAAACTAAATGGAGCAGATGATGTACAACAAAATTCTCCATCAGATTCATTGCAACCTTCCCCATTTGATTTGGCTTCAGAAGCCGCCAGTAGTTTAAATTGTTCAACAAGTTGTGCATCTCTGGAACCATCCAGTGCTCTCCCTTCTTCTCCAAGCAAATCCATTGAGTACACGGAAAACAAAGATGGGTCTCTGACGAGCATTGGTACCGTCTCAACTCCCACGAGAAAAACCTTTGAGTACACCGAAAACAAAGATGGGTCTCTCACCAGCATTGATGCCGTCTCAATTCCAGCTAGAGAAATCAATGAATGCACAGTAAACAAAGATGGTTCTCTTAAAAGCATTGATGCCATGTCAACCCCAGCTAAACTTATTTCTACTCCAATTAGGTTGATGAGTGCCACACCTGCATTGTGTTCACCCAAAAGACATTATATGAGCCCAGATGACCAATCTACCAGTTCTTTGAACAAGTTAGCTAGGCGTCCACCTCGCTCAAGGTCATTAAAATTTGACACTCCAGTGAAGAACAAGGAGGCTATGAATGAAGACAATACTGGTGCCTTACCAATAGATGATGACGTTTTTGACATCCTCCCTGGAAAACTTATCCAATCGATTAGGGAAAAGGAAAGAATTGCAATGGAGGAAAGAGACCCAGCTATCACTCAAGCAAAGAAAAGGAAGAAAATGATAGCAAATCTCCCTAAGCTGTTTGATATGATTCGCCTCTTGCTTCGACAGCGTAATTGTATCACGAAAGTGGAGCTTGTAAGCAAGATAATCTCAAGCCACAGCGATATTGTTGATAGAAGTGAAGTTGAAGAGCAGCTAAGTTTGTTGCAAGAACTAGCACCGGAATGGATTTCTGAGAAGCAGGTCTCTAGTGGGGATTTTCTATTATTCATAAACAAACTGTTGAGCCCTGAAACCATTCGAGCATCTCTTGAAGAAGCAACGTAG 1914 0.4326 MDKCSEAASPSCRGRSKKPNLHSSKVQSPSPVRFSSQTPEKPPQRIRNRGVALSIADIRKAGKGLQEMNRRSETTSSQQSKSVRRQISLWPSSPSKSKITDDESSKLPEKYEILDQFFDRLDTLISMFRLKGKTPSFTEISSRIESLTDRRFTHGHLAQLKYILPEAIVLKKFLVHDERTCCMKPDIHISLNPEAVESDAKGHPQRRRVSLKKLFQSRVRDFLESHPEVDEIPEGTLPEPFNRPKKDNILDMLETRLPTKLSTCMRYNDIVNNTESGDIDEKLLVPIKTSVELPNEHLKAPSVIAPSFRARFSLKVKLNGADDVQQNSPSDSLQPSPFDLASEAASSLNCSTSCASLEPSSALPSSPSKSIEYTENKDGSLTSIGTVSTPTRKTFEYTENKDGSLTSIDAVSIPAREINECTVNKDGSLKSIDAMSTPAKLISTPIRLMSATPALCSPKRHYMSPDDQSTSSLNKLARRPPRSRSLKFDTPVKNKEAMNEDNTGALPIDDDVFDILPGKLIQSIREKERIAMEERDPAITQAKKRKKMIANLPKLFDMIRLLLRQRNCITKVELVSKIISSHSDIVDRSEVEEQLSLLQELAPEWISEKQVSSGDFLLFINKLLSPETIRASLEEAT* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0832 637 MobiDBLite consensus disorder prediction 1 104 - -
Vra8g0832 637 MobiDBLite consensus disorder prediction 457 487 - -
Vra8g0832 637 Gene3D - 510 637 IPR038090 -
Vra8g0832 637 CDD Cdt1_c 515 634 IPR032054 -
Vra8g0832 637 Pfam DNA replication factor CDT1 like 107 206 IPR014939 -
Vra8g0832 637 MobiDBLite consensus disorder prediction 463 478 - -
Vra8g0832 637 MobiDBLite consensus disorder prediction 21 43 - -
Vra8g0832 637 Pfam DNA replication factor Cdt1 C-terminal domain 520 611 IPR032054 -
Vra8g0832 637 SMART CDT1_2 107 239 IPR014939 -
Vra8g0832 637 SUPERFAMILY "Winged helix" DNA-binding domain 104 241 IPR036390 -
Vra8g0832 637 MobiDBLite consensus disorder prediction 359 385 - -
Vra8g0832 637 PANTHER DNA REPLICATION FACTOR CDT1 21 637 IPR045173 GO:0003677|GO:0030174|GO:0071163
Vra8g0832 637 MobiDBLite consensus disorder prediction 68 98 - -
Vra8g0832 637 CDD Cdt1_m 106 260 IPR014939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0832 Vra-Chr8 17219651 17222994 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0832 436 635 Core DNA Replication Machinery Family AT2G31270 50.935 1.55e-48 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0832 K10727 - gmx:100778818 782.326