Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0829 ATGGCACTGAACAAGAATCACTCCTACAACAACAAACTTGGATATGAAGCTCTCCCACCCATTAAAGCCCTGGCTGAAACACTTCAACACCAACCACAACCTTCTTCCTCAGACTATGCTTTTCCAATATTTGTCATTGTTGTGCTCAGTATCTTAGCCACTGTTTTGTTGCTCCTCAGCTACTTCACTTTCTTAACCAAATACTGCTCAAATTGGCGTCAAGTTAACCCAATGAGATGGATTTCCCTCCTGAGAATTCGACACAATGAGGATCCCTTCATAGCATTCTCTCCTGCTATGTGGAACCGAGGGCTTGATGAGTCTGTCATCAGAGAAATCCCAACTTTTCAGTTCATAAAAGGAGAAGAAGGTGAGGATCAAAGTGTGTATGGCTGTGTGGTTTGTTTGGCTGAGTTTAAGGAACATGATGTGCTAAAAGTTCTTCCCAATTGCAACCATGCCTTTCATTTGGACTGCATTGACGTGTGGCTTCAGGCCAATTCCAATTGCCCCCTTTGCAGATCAAGCATTTCAGGCAACACACACTGTCCATTGGATCATATCATAGCTCCAAGTTCTTCTCCTCAGGATTCTCAGTTGCTCTCCAATATGGGTAGTGATGAAGATTTTGTGGTTATCGAACTGGGGGGAGAGCCTGGAGCAGTGCTTCCACAGGTGCAACAAGAGAGGAATGACTCAAGGGGAAGCTTGACACATAGAAATCACTCTACAAGGAAGGTGGAGCACTTGAAACCAAGGAAGTGCCACCATGTTTCCATCATGGGAGATGAGTGTATTGATATCAGAAAGAAAGATGACCAATTTCTCATTCAGCCAATTAGAAGATCTTTCTCAATGGATTCAGCACATGATAGACAAACTTATTTGGATGCTCAAGTCATAATACAACAAAACAGGCATCAGAATGAGGCTGGTGCCAGTGAGTACTATAACAGCAGATGTAGAAGAGCATTCTTCCCATTTTGTTATGGAAAGGGATCCAAAAATGCAGTTCTTCCTCTGGAGAATGATGTTTAG 1038 0.4297 MALNKNHSYNNKLGYEALPPIKALAETLQHQPQPSSSDYAFPIFVIVVLSILATVLLLLSYFTFLTKYCSNWRQVNPMRWISLLRIRHNEDPFIAFSPAMWNRGLDESVIREIPTFQFIKGEEGEDQSVYGCVVCLAEFKEHDVLKVLPNCNHAFHLDCIDVWLQANSNCPLCRSSISGNTHCPLDHIIAPSSSPQDSQLLSNMGSDEDFVVIELGGEPGAVLPQVQQERNDSRGSLTHRNHSTRKVEHLKPRKCHHVSIMGDECIDIRKKDDQFLIQPIRRSFSMDSAHDRQTYLDAQVIIQQNRHQNEAGASEYYNSRCRRAFFPFCYGKGSKNAVLPLENDV* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0829 345 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 342 - -
Vra8g0829 345 CDD RING-H2_PA-TM-RING 132 174 - -
Vra8g0829 345 Pfam Ring finger domain 132 174 IPR001841 -
Vra8g0829 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 180 IPR013083 -
Vra8g0829 345 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Vra8g0829 345 MobiDBLite consensus disorder prediction 229 248 - -
Vra8g0829 345 PANTHER RING-H2 FINGER PROTEIN ATL16 5 342 IPR044600 GO:0016567|GO:0016740
Vra8g0829 345 SUPERFAMILY RING/U-box 109 179 - -
Vra8g0829 345 SMART ring_2 132 173 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0829 Vra-Chr8 17152925 17155551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0829 32 308 C3H Transcription Factor Family AT1G04360 44.660 1.45e-73 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0829 K19041 - gmx:100809883 626.706