Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0827 ATGGAAGAGGACTCCTCTAAGGAGAAAAACTTGCAATCCAAGAAAGAGCCACGCTATAGAGGAGTCCGGCAGCGGCCATGGGGAAAGTTTGCAGCCGAAATTCGAGACCCCGCTCGGCATGGCGGTCGAGTATGGCTGGGAACATTCCTCACGGCGGTGGAAGCTGCTAGGGCTTATGACCGTGCTGCCTTTGAGATGAGAGGTACTTCAGCCATTCTCAACTTTCCAAATGAGTATCCTTCATCTTCTTCTTCTATGACTTCCTCTTCATCATTACCATCTTCTTCTTCTTCGTCTTCTTCAATGCTTAAAACGGATCATGGTAAACAAGTTATTGAGTTTGAGTGCTTGGATGACAAATTGTTGGAAGACCTTCTTGATTGTGATGACTATTCCAACCAGAAAGACTTGCCTAAGAAATGA 423 0.4586 MEEDSSKEKNLQSKKEPRYRGVRQRPWGKFAAEIRDPARHGGRVWLGTFLTAVEAARAYDRAAFEMRGTSAILNFPNEYPSSSSSMTSSSSLPSSSSSSSSMLKTDHGKQVIEFECLDDKLLEDLLDCDDYSNQKDLPKK* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0827 140 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Vra8g0827 140 PRINTS Ethylene responsive element binding protein signature 58 78 IPR001471 GO:0003700|GO:0006355
Vra8g0827 140 PANTHER DNA-BINDING DOMAIN 3 130 IPR044808 GO:0003700|GO:0009873
Vra8g0827 140 MobiDBLite consensus disorder prediction 75 105 - -
Vra8g0827 140 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Vra8g0827 140 PANTHER ETHYLENE RESPONSE FACTOR 3 130 - -
Vra8g0827 140 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700|GO:0006355
Vra8g0827 140 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Vra8g0827 140 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Vra8g0827 140 MobiDBLite consensus disorder prediction 1 23 - -
Vra8g0827 140 CDD AP2 17 77 IPR001471 GO:0003700|GO:0006355
Vra8g0827 140 Pfam AP2 domain 17 68 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0827 Vra-Chr8 17106302 17106778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0827 15 130 AP2-EREBP Transcription Factor Family AT3G23230 58.065 1.30e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra8g0827 AP2 2.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0827 - - gmx:100810414 194.897