Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0826 ATGACTACTTTCCATTTGTTTCAGAACCCAGACAGGAAAATGTTTCAGGAGCCATCAGAAATTTTGTTCGAATCATTGTCGAGCAATCATGTTCTGGACACAGTCCATGATTCACTTTCATTCGATATGGTTGAGGAATCTACAACAGAAGAAAACACCAACAAGGCAAAGCAATTGGTGGCGAAGGGTACTGCAGAAGCGAAGAACAAGGAGAGGTCGTACATAGGTGTGAGGAAGAGGCCATGGGGAAAATATGCAGCAGAGATCAGAGACACAACAAGGAATGGAACAAGGGTTTGGCTTGGAACCTTTGACAGTGCAGAAGCTGCTGCTTTGGCTTATGATCAAGCTGCATTCTCTATGAGAGGCCACAATGCTGTCCTAAATTTTCCAGTCAAAANGGTAAAAGAATCTTTGCAAGAGATCCAATACACCTGCTTCACTGGTTCTTCTCCTGCACTTGCACTCAANGAGAGGCACTGCATCCAAAGAAAATTGTCATCACAAGCTAAAAAGTCTAAAGGGAAAAACCCATCAGAGCATCCAACACCAACTTTGCTTGTGTTAGAGGATTTGGGAGTTGAATATTTAGACCATCTTTTAAGCATATCAGATCAAACTCAAAGCCCTAGCTGCTTCCACTAA 645 0.4248 MTTFHLFQNPDRKMFQEPSEILFESLSSNHVLDTVHDSLSFDMVEESTTEENTNKAKQLVAKGTAEAKNKERSYIGVRKRPWGKYAAEIRDTTRNGTRVWLGTFDSAEAAALAYDQAAFSMRGHNAVLNFPVKXVKESLQEIQYTCFTGSSPALALXERHCIQRKLSSQAKKSKGKNPSEHPTPTLLVLEDLGVEYLDHLLSISDQTQSPSCFH* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0826 214 ProSiteProfiles AP2/ERF domain profile. 73 131 IPR001471 GO:0003700|GO:0006355
Vra8g0826 214 CDD AP2 74 132 IPR001471 GO:0003700|GO:0006355
Vra8g0826 214 Gene3D AP2/ERF domain 73 133 IPR036955 GO:0003700|GO:0006355
Vra8g0826 214 Pfam AP2 domain 74 124 IPR001471 GO:0003700|GO:0006355
Vra8g0826 214 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Vra8g0826 214 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Vra8g0826 214 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 22 203 - -
Vra8g0826 214 SUPERFAMILY DNA-binding domain 74 132 IPR016177 GO:0003677
Vra8g0826 214 SMART rav1_2 73 137 IPR001471 GO:0003700|GO:0006355
Vra8g0826 214 PANTHER DNA-BINDING DOMAIN 22 203 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0826 Vra-Chr8 17059234 17059986 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0826 41 207 AP2-EREBP Transcription Factor Family AT3G23240 47.305 6.39e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra8g0826 AP2 6.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0826 K14516 - gmx:100812017 296.589