Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0825 ATGCCGTCGCTCCTCTCTCCGGGGAGAATCCACTCTCTGGAGGTAGAGAATTTCAAGTCCTACAAGGGGTTACAAATTATCGGCCCCTTCTACGACTTCACTGCCATCATCGGCCCCAACGGCGCCGGTAAGTCCAACCTCATGGATGCCATCAGCTTCGTCCTCGGCGTCCGCACCGGCCAGCTCCGCGGCGCGCAGCTCAAGGACCTCATCTACGCCTTCGACGACCGCGAGAAAGACCAGAAGGGTCGCCGAGCCTTCGTCCGCCTTGTCTACCACCTCGCCAACTCCACTGAGATTAGATTCACGCGCACCATCACCAGCGCCGGCTCCAGCGAGTACCGCATCGACGACACCCTCGTCAATTGGGACACCTACAACAACAGACTGAAGTCCCTTGGCATCCTCATCAAAGCTCGCAATTTCTTGGTCTTTCAGGGTGATGTTGAGTCCATTGCGTCCAAGAATCCCAAAGAGCTCACTGCGCTGGTGGAGCAGATATCTGGCTCTGACGAGTGCAAGAGGGACTATGAGCAGTTTGAAGAGGAAAAAGGCACTGCTGAAGAAAAATCAGCACTGATTTATCAGAAGAAGAAGACTGTTGTTATGGAAAGAAAGCAGAAGAAAGAACAGAAGGAAGAAGCAGAGAAGCATCTCCGCCTGCAACAAGAACTGAAATCTATGAAGAGAGAACATTTCTTGTGGCAGTTGTTTAATATACATAATGATTATGTTAAAACAATTAAGGATCTTGAAGACGAGAAGAGAAGTCGTGAAGGTGTTGTTAAAGAGTTGGAAAATTTTGAAAATGAAGCTAGTAAAAAGAAAAAAGAGCAGGCCAAATATCTCAAAGAGATTACACTGCGGGAAAAGAGAATTAATGAGAAAAACAGCAAACTTGATAAGAGTCAGCCCGAGCTTCTGAAGTTAAAGGAAGAAATGGCTCGTATTACTTCAAAAATTAAGAAAGGGAAGAAAGAACTTGATAGAAAAAAGGTTGAACGGACGAAGCATGATGCTGAAATTGCATCACTACAGAATGGCATCCAGGATCTTACAGCGAAAATGGCAGACCTTCAGGAAAAGAGACTGGGTGTTGATGATGAGCTTGATTTGCAAGGCAATGATTTGGATGAGTATTTTCGAATCAAAGAGGAGGCTGGGATGAAAACTGCAAAGCTTAGAGAAGAAAAGGAGCTTCTAGATAGGAAACTAAATGCTGATTACGAAGCTCAAAAGAATTTGGAAGAAAATCTTCAACAGTTAAGAAACAGGGAATCTGAACTGAATTCACAGGAAGAACAGATGCGAGCAAGGCGTGAAAAGATTGTTGATAATTCTACAAAAAATAAAAATGGCCTTGATGACTTGAAAAAGGAACTACGTGTGATGCAGGACAAACATCGTGATTCCAGGAAAAAATATGAAAATTTGAGGTTAAAAATTGGTGAAGTAGAAGATCAACTTCGTGAATTGAGGGCTGATAGATATGAAAGTGAGAGAGATGTTAGGTTGTCTCAGGCTGTTGAGACTCTGAAGTGCCTGTTTCAAGGAGTTCATGGTCGCATGACTGATCTTTGTAGGCCAACACAGAAGAAGTATAACCTTGCTGTTACTGTTGCTATGGGTAAATTTATGGACGCAGTTGTAGTTGACAAGGAGTCAACTGGGAAGGAATGCATCAAGTATTTAAAAGATCAGAGGCTTCCTCCCCAGACATTTATTCCTCTGGAATCAGTTCGGGTGAAGCCAATAATGGAAAGATTGCGCACATTAGGGGGTACAGCAAAACTGGTCTTTGATGTGATTCAGTTTGATCCCTCCTTGGAGAAGGCAATTCTCTTTGCTGTTGGGAACACACTTGTTTGTGATGATCTGGAAGAGGCCAAAATTTTAAGCTGGAGTGGAGAGAGGTTTAAAGTTGTAACTGTTGATGGAATTCTGCTCACAAAATCCGGCACAATGACTGGAGGTACTAGTGGTGGAATGGAAGCAAGGTCAAAACAGTGGGATGACAAGAAAATTGAAGGACTTAATAAAAAGAAAGAGCAATATGAAGCAGAGTTGGAATCACTAGGATCAATAAGGGATATGCACCTTAAAGAGTCTGAAGCATCTGGAAAAATTAGTGGACTTGAGAAGAAAATTCAATATGCTGAAATTGAGAAGTCAAGCATTGAAGATAAACTTTCAAATCTGAGCCACGAAAAGAAGACAATCAAAGAAAGAATTGAATGTATCAGTCCAGAGCTGAAGAGGTTAAACGATGCTGTTAACAAGAGCAATGAAGAAATACAAAAGCTTGAGAAGCGGATAAATGAAATTACTGATAGGATATACAGAGACTTTAGCAAGTCAGTTGGGGTAGCAAACATCCGTGAATATGAAGAAAATAGACTCAAGGCTGCTCAAACTATAGCGGAGGAGAGGCTGCACTTTAGTAGCAATCTTTCAAAATTAAAATATCAGTTAGAATATGAGCAAAATCGGGACATGAGTTCAAGAATTCTAGAATTGGAAGCTTCTCTAAGTGCTCTAGAGAAAGATTTAAAACGTGTACAGGACAGAGAGGCTGCAGCGAAGGTAGCGGCTGAGAAGTCTACTGAAGAGGTTAATCAGTTAAAGGAAGAAGTTAAAGAGTGGAAATCAAAGTCAGAAGAATGTGAGAAGGAAATCCTAGAGTGGAAGAAGAAAGCTTCTGCAGCCACAACAAACATATCCAAACTTATTCGCCTGATAAATTCTAAGGAGGCACAAATTGAACAGTTGAATGTGAAAAAACAGGAAATATTCGAAAAGTGTGAACTTGAACAGATTAACCTCCCTATCATATCAGATCCCATGGATACTGATAACTCAGTAACAGCTCCACATTTTGATTTTGATCAACTAAGTAGGGCACTGAAAGATAAGAGGCACTCAGACAGGGATAAAATTGAGGGAGACTTTAAGCAAAAAATTGATGCCTTGGTAGCTGAGATTGAAAGAACAGCACCAAATTTGAAGGCATTGGACCAATATGAGGCTCTGTTGGAAAAGGAAAGAGCTGTAACTGAGGAGTTTGAAGCTGTCAGGAAAGAGGAGAGGGAAAAAACACAGAGATTCAATGAGGTTAAGCAGAGAAGGTACCAATTGTTCATGGATGCTTTTAACCATATATCTGGTAATATAGATAAAATTTACAAACAACTTACAAAGAGCAATACACATCCACTGGGGGGAACAGCATATCTAAACTTGGAAAATGACGATGATCCATTTCTCCATGGCATCAAGTACACTGCTATGCCCCCAACGAAGCGTTTCCGTGATATGGAGCAACTATCTGGTGGTGAAAAGACAGTTGCAGCACTTGCATTGTTATTTTCCATCCACAGTTACAAGCCTTCACCATTTTTTATACTGGACGAAGTTGATGCTGCGTTGGACAACTTGAATGTTGCCAAGGTTGCTGGCTTTATTCGTTCAAAATCATGCGAAGGGGCAAGGACTAGCCAGGATCCTGATGGTGGAAGTGGTTTTCAGAGTATTGTGATATCACTGAAAGACACTTTTTATGACAAAGCTGAAGCGCTAGTTGGTGTTTACAGAGATTCTGAAAGCGGTTGTTCGAGAACCCTCACATTTGATCTGACCAAATACCGGGAGTCTTAA 3654 0.4182 MPSLLSPGRIHSLEVENFKSYKGLQIIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDDREKDQKGRRAFVRLVYHLANSTEIRFTRTITSAGSSEYRIDDTLVNWDTYNNRLKSLGILIKARNFLVFQGDVESIASKNPKELTALVEQISGSDECKRDYEQFEEEKGTAEEKSALIYQKKKTVVMERKQKKEQKEEAEKHLRLQQELKSMKREHFLWQLFNIHNDYVKTIKDLEDEKRSREGVVKELENFENEASKKKKEQAKYLKEITLREKRINEKNSKLDKSQPELLKLKEEMARITSKIKKGKKELDRKKVERTKHDAEIASLQNGIQDLTAKMADLQEKRLGVDDELDLQGNDLDEYFRIKEEAGMKTAKLREEKELLDRKLNADYEAQKNLEENLQQLRNRESELNSQEEQMRARREKIVDNSTKNKNGLDDLKKELRVMQDKHRDSRKKYENLRLKIGEVEDQLRELRADRYESERDVRLSQAVETLKCLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVDKESTGKECIKYLKDQRLPPQTFIPLESVRVKPIMERLRTLGGTAKLVFDVIQFDPSLEKAILFAVGNTLVCDDLEEAKILSWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKIEGLNKKKEQYEAELESLGSIRDMHLKESEASGKISGLEKKIQYAEIEKSSIEDKLSNLSHEKKTIKERIECISPELKRLNDAVNKSNEEIQKLEKRINEITDRIYRDFSKSVGVANIREYEENRLKAAQTIAEERLHFSSNLSKLKYQLEYEQNRDMSSRILELEASLSALEKDLKRVQDREAAAKVAAEKSTEEVNQLKEEVKEWKSKSEECEKEILEWKKKASAATTNISKLIRLINSKEAQIEQLNVKKQEIFEKCELEQINLPIISDPMDTDNSVTAPHFDFDQLSRALKDKRHSDRDKIEGDFKQKIDALVAEIERTAPNLKALDQYEALLEKERAVTEEFEAVRKEEREKTQRFNEVKQRRYQLFMDAFNHISGNIDKIYKQLTKSNTHPLGGTAYLNLENDDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARTSQDPDGGSGFQSIVISLKDTFYDKAEALVGVYRDSESGCSRTLTFDLTKYRES* 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0825 1217 Coils Coil 342 369 - -
Vra8g0825 1217 SUPERFAMILY Smc hinge domain 481 682 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vra8g0825 1217 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 9 1216 - -
Vra8g0825 1217 Coils Coil 170 190 - -
Vra8g0825 1217 CDD ABC_SMC1_euk 1096 1211 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Vra8g0825 1217 Coils Coil 906 933 - -
Vra8g0825 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 872 1200 IPR027417 -
Vra8g0825 1217 Pfam SMC proteins Flexible Hinge Domain 517 632 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vra8g0825 1217 Gene3D - 578 660 - -
Vra8g0825 1217 SMART SMC_hinge_2 517 633 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vra8g0825 1217 Coils Coil 709 743 - -
Vra8g0825 1217 Pfam RecF/RecN/SMC N terminal domain 10 1198 IPR003395 -
Vra8g0825 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 264 IPR027417 -
Vra8g0825 1217 Coils Coil 829 898 - -
Vra8g0825 1217 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Vra8g0825 1217 Coils Coil 307 327 - -
Vra8g0825 1217 Coils Coil 1007 1027 - -
Vra8g0825 1217 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 9 1216 - -
Vra8g0825 1217 Coils Coil 405 442 - -
Vra8g0825 1217 Gene3D - 8 230 IPR027417 -
Vra8g0825 1217 Gene3D - 969 1216 IPR027417 -
Vra8g0825 1217 Coils Coil 751 778 - -
Vra8g0825 1217 Coils Coil 454 502 - -
Vra8g0825 1217 PIRSF SMC 8 1214 IPR024704 GO:0005524|GO:0016887
Vra8g0825 1217 Coils Coil 675 695 - -
Vra8g0825 1217 Gene3D - 498 577 - -
Vra8g0825 1217 Coils Coil 198 231 - -
Vra8g0825 1217 Coils Coil 251 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0825 Vra-Chr8 17008131 17037183 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0825 7 56 Structural Maintenance of Chromosomes family AT5G15920 42.000 5.46e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0825 K06636 - gmx:100785315 2108.95