Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0823 ATGACTTCCCCTTTCTTCCAGAACCCATCAGATTGGGATATGTTGCAGGAGCCTTCAGAAATTTTGTTCGAATCATTGTCAAGCAATAATGCAGTTCTTGACCCTATTCAAGATTCTCTTTCCTTCGATATGGTTGATTTCTCCACGGCACCAGCACAAGGAAATCACAACCAATTGGTGGTAAAGTGTGAAAAAGTGCAGAATAAGGAAAAGTCATACATCGGTGTGAGGAAACGGCCTTGGGGGAAATTTGCTGCAGAGATCAGAGACACAACCAGGAATGGCTCAAGGGTTTGGCTTGGAACCTTTGACAGTGCAGAGGCTGCTGCGTTAGCCTATGATCAAGCTGCATTTTCCATGAGAGGCCATAATGCCGTACTCAATTTTCCAGTAAAAACGGTGAAAGAATCTTTGCAAGAGATTCAATATAGCTTCAGCAATGGATCTTCTCCCGCACTTGCACTCAAGGAAAGGAACTTCATCCAGAGAAAACTGTCATCAAGGGCCAGAAAATATAAAGGGAAAGAGACATCAGAAGCAGCAACACCAAGTGTTGTCGTGTTAGAGGACTTGGGAGTTGACTATCTAGAACAACTTCTAAGCATGTCTGATCAAAGTGCAAGCCCTACCAACTTCAATTAA 642 0.433 MTSPFFQNPSDWDMLQEPSEILFESLSSNNAVLDPIQDSLSFDMVDFSTAPAQGNHNQLVVKCEKVQNKEKSYIGVRKRPWGKFAAEIRDTTRNGSRVWLGTFDSAEAAALAYDQAAFSMRGHNAVLNFPVKTVKESLQEIQYSFSNGSSPALALKERNFIQRKLSSRARKYKGKETSEAATPSVVVLEDLGVDYLEQLLSMSDQSASPTNFN* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0823 213 CDD AP2 71 131 IPR001471 GO:0003700|GO:0006355
Vra8g0823 213 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Vra8g0823 213 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Vra8g0823 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B-LIKE 60 208 - -
Vra8g0823 213 SMART rav1_2 72 136 IPR001471 GO:0003700|GO:0006355
Vra8g0823 213 Gene3D AP2/ERF domain 71 132 IPR036955 GO:0003700|GO:0006355
Vra8g0823 213 ProSiteProfiles AP2/ERF domain profile. 72 130 IPR001471 GO:0003700|GO:0006355
Vra8g0823 213 SUPERFAMILY DNA-binding domain 72 131 IPR016177 GO:0003677
Vra8g0823 213 Pfam AP2 domain 72 123 IPR001471 GO:0003700|GO:0006355
Vra8g0823 213 PANTHER DNA-BINDING DOMAIN 60 208 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0823 Vra-Chr8 16982785 16983697 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0823 59 208 AP2-EREBP Transcription Factor Family AT3G23240 54.667 6.81e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra8g0823 AP2 7.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0823 K14516 - gmx:100811486 331.643