Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0822 ATGTCTTCCCCTTTCTTTCAGAGCCCATATTGGGACATGATCATGCAGATGCAGGAGCCTTCAGAAATTTTGTTCCAACCGTTGTCATCTAATGATGTTCTTGACCCTCTACACGATTCTCTTTCCTTCGACATGGTTGACTTCTCTACAGCTCCAGCAGAAGGAAACCACAAAGAGGCAAAGAAATTGGTGGTTGAGTCTGAGGTGAAGAATAGGGATAGGTCATACATAGGTGTGAGGAAAAGGCCTTGGGGAAAATTTGCTGCAGAAATCAGAGACACGACAAGGAGTGGGAAAAGGGTTTGGCTTGGAACCTTTGAGAGTGCAGAAGCTGCTGCTTTAGCTTATGACCAAGCTGCATTTTCCATGAGAGGCCATAATGCTGTACTCAATTTTCCTGTCAAAAGAGTTAAAGAGTCTTTGCAAGAGATCCAATATACCTGCTTCAATGGCACTTCTCCTGCACTTGCACTCAAGGCGAGGCACTGCAAGAAAAAACACTTTTCAAAAGCAAAAGAGTGTAAAGGGAAAGAGAAATCAAAGCCATGTGTAGTGGTATTAGAAGATTTGGGAGTCGACTATCTAGAGCAACTTCTTAGCATATCAGATCAAAGTGCAAGCCCTACCTACTTCAACTAA 639 0.4319 MSSPFFQSPYWDMIMQMQEPSEILFQPLSSNDVLDPLHDSLSFDMVDFSTAPAEGNHKEAKKLVVESEVKNRDRSYIGVRKRPWGKFAAEIRDTTRSGKRVWLGTFESAEAAALAYDQAAFSMRGHNAVLNFPVKRVKESLQEIQYTCFNGTSPALALKARHCKKKHFSKAKECKGKEKSKPCVVVLEDLGVDYLEQLLSISDQSASPTYFN* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0822 212 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Vra8g0822 212 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Vra8g0822 212 ProSiteProfiles AP2/ERF domain profile. 75 133 IPR001471 GO:0003700|GO:0006355
Vra8g0822 212 PANTHER DNA-BINDING DOMAIN 56 201 IPR044808 GO:0003700|GO:0009873
Vra8g0822 212 SUPERFAMILY DNA-binding domain 76 134 IPR016177 GO:0003677
Vra8g0822 212 SMART rav1_2 75 139 IPR001471 GO:0003700|GO:0006355
Vra8g0822 212 CDD AP2 76 134 IPR001471 GO:0003700|GO:0006355
Vra8g0822 212 Pfam AP2 domain 76 126 IPR001471 GO:0003700|GO:0006355
Vra8g0822 212 Gene3D AP2/ERF domain 75 135 IPR036955 GO:0003700|GO:0006355
Vra8g0822 212 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 56 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0822 Vra-Chr8 16972456 16973628 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0822 70 207 AP2-EREBP Transcription Factor Family AT3G23240 57.746 5.94e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra8g0822 AP2 1.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0822 K14516 - gmx:100812017 298.13