Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0821 ATGACTTCTCCTTTCATCCAGAACCAAGACTGGAACATGTCGCCGGAGCCATCAGAAATTTTGTTCAATTCATTGCCAAGAAATGCTGTTCTTGACCCTATTCACGATTCACTTTCCTTCGATATGGTTGATTTCTCCACTGCACCACCACAAGGAAATCACAACCAGTTGATGCTCAAGACAGAAGAAGAAGTCAAAAAGAAGGAGAGGTCGTATAAAGGTGTGAGGAAGAGGCCATGGGGAAAATATGCAGCAGAGATCAGAGACACAACAAGGAATGGAACAAGGGTTTGGCTTGGAACCTTTGACAGTGCAGAAGCTGCTGCTTTGGCTTATGATCAAGCTGCATTCTCTATGAGAGGCCACAATGCTGTCCTAAATTTTCCAGTCAAAANGGTAAAAGAATCTTTGCAAGAGATCCAATACACCTGCTTCACTGGTTCTTCTCCTGCACTTGCACTCAANGAGAGGCACTGCATCCAAAGAAAATTGTCATCACAAGCTAAAAAGTCTAAAGGGAAAAACCCATCAGAGCATCCAACACCAACTTTGCTTGTGTTAGAGGATTTGGGAGTTGAATATTTAGACCATCTTTTAAGCATATCAGATCAAACTCAAAGCCCTAGCTGCTTCCACTAA 639 0.4257 MTSPFIQNQDWNMSPEPSEILFNSLPRNAVLDPIHDSLSFDMVDFSTAPPQGNHNQLMLKTEEEVKKKERSYKGVRKRPWGKYAAEIRDTTRNGTRVWLGTFDSAEAAALAYDQAAFSMRGHNAVLNFPVKXVKESLQEIQYTCFTGSSPALALXERHCIQRKLSSQAKKSKGKNPSEHPTPTLLVLEDLGVEYLDHLLSISDQTQSPSCFH* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0821 212 SMART rav1_2 71 135 IPR001471 GO:0003700|GO:0006355
Vra8g0821 212 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Vra8g0821 212 PRINTS Ethylene responsive element binding protein signature 95 111 IPR001471 GO:0003700|GO:0006355
Vra8g0821 212 Gene3D AP2/ERF domain 70 131 IPR036955 GO:0003700|GO:0006355
Vra8g0821 212 CDD AP2 72 130 IPR001471 GO:0003700|GO:0006355
Vra8g0821 212 Pfam AP2 domain 72 122 IPR001471 GO:0003700|GO:0006355
Vra8g0821 212 Coils Coil 58 78 - -
Vra8g0821 212 ProSiteProfiles AP2/ERF domain profile. 71 129 IPR001471 GO:0003700|GO:0006355
Vra8g0821 212 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B-LIKE 49 207 - -
Vra8g0821 212 SUPERFAMILY DNA-binding domain 72 130 IPR016177 GO:0003677
Vra8g0821 212 PANTHER DNA-BINDING DOMAIN 49 207 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0821 Vra-Chr8 16915533 16916625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0821 66 205 AP2-EREBP Transcription Factor Family AT3G23240 54.286 2.73e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra8g0821 AP2 2.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0821 K14516 - gmx:100812017 318.546