Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0819 ATGATTAGGTCTTTCGTTGGAAAGATTCAAAAGGGTGTCTCGCAGATTGTGCCTGGAAAACCTGCACTGAACTACATCAATGAAAACCAATTGGAAAACACAGGGGCTGTGCCAGAAGATGTTAGCAAAGGGTATTTTGCAGTTATTGCAATCAAAGATGGAGAAATCAAAAGGTTTGTGGTTGAGTTGGATTACTTGACTAATCCTGCATTCTTGGGACTGTTAGATCAAGCTGGAGAAGAGTATGGTTTCAAGCAACAAGGAACTCTTGCAGTCCCTTGTAAGCCTAAGGAGTTACAGAAGATTCTAGATGGTTGGAGAGTGAGACCAGACAGCATCAAAGGTGCAGGAAGGGATTTATATGTACCTAAGTTTCTATGA 381 0.4147 MIRSFVGKIQKGVSQIVPGKPALNYINENQLENTGAVPEDVSKGYFAVIAIKDGEIKRFVVELDYLTNPAFLGLLDQAGEEYGFKQQGTLAVPCKPKELQKILDGWRVRPDSIKGAGRDLYVPKFL* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0819 126 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 1 122 IPR003676 GO:0009733
Vra8g0819 126 Pfam Auxin responsive protein 35 103 IPR003676 GO:0009733
Vra8g0819 126 PANTHER SMALL AUXIN-UP RNA-RELATED 1 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0819 Vra-Chr8 16873635 16874325 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0819 38 110 Calmodulin-binding Proteins AT3G43120 36.986 4.89e-11 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0819 - K14488 gmx:106795483 214.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0429 3 4968446 4969103 Vra8g0819 8 16873635 16874325 PCT