Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0807 ATGGTTCCATTAAGCACTTTCATGGACCAACCTAAAATTATTACAATGCTAACGTTCACAACAATGGCATTGTTGCTATCACGGGCTCAGGCCACGCGAAAGTGCGGGAATTGCGGTCCGAACCCGGTTCCTTACCCATTAAGCACCGGACCCGACTGTGGCGACCCGTTGTACAAGATCCGGTGCACCGCGGGTATTCTCTGGTTCGATGCACTCGCCGGATCATCTTACGCGATCAGGGCTATTGACCCGTTCACCCGTCGGATCATAACTCGACCCGCCACGCTGGCCCCAAAAACGTGCGTGTCTACGGACTTCCGCAGCGAAGGCATGCACCTGAACGAGACCCTTCCTTTTAGCGTGGCTTCCGGAAACACCGTTTTTCTCTTCAACTGCACCACCCACGCGCCTTCGATGAACTGCTCTCCAAGCAGCGCGTGCCACAGCTATATTAAGGAGCACGCAGATTTCGGCGCGTGCGGGGCCGTGGGTGCGGGAGCGTGCTGCGAATACCGAAGTGGCGGGGCCCGAAAAGAGTTCGCGATTCGCTTGCGCGGCGGAGAGTGCGCGGCTTATGAGAGTTTTGTGGATTTTAACGGCACGGTGGCGACTGTGGGGAAGCGGTGGCCGGAAAGTGGGGTGGGGATCGAATGGGTGGCACCACAGGAACCGGTTTGTAAGGCGAGTGTAGATTGCAAGGAATTGTTGAACTCGAAATGTGGAGTGGGGCCCAGTGGTGGGGTGCAAAGGTGCTTCTGCAATGCTGGGTTCGGGTGGGACCCCATCAATGGTTCGTGTCAACCACAAACTCAGACACACAACACAACGTGCACAGGACATGGAAAAGACAGCCACTGCAAAGTTCGGAAGAAAAAGAAGATGCTTGTGCCTGTGGTTGTTTCCGTAGGAGGAATAGTGTTTGTTCTAGCAATCACAGGAGTGATCTTCTACAAGAAGCATAACCAAGCAAAAAGAAAAGAAAAGGAGGCTAAAATGAATAAGAGAAAAAAAGAAGTCTCAAGTGTGAAAGCCAGTGCTTTATCGTCAAGAATCTTCACTGGGAGAGAGATAAGAAAGGCAACGAACAATTTCTCCCCAGAAAATCTGATTGGAACTGGTGGATTCGGTGAAGTGTTCAAGGGGACATTCGATGATGGAACCGTGTTTGCCATCAAGCGTGCGAAGCTTGGAAGCACCAAAGGCATTGATCAGATGCAAAACGAGGTTCGAATTCTGTGCCAAGTAAACCACAGAAGCTTGGTGAGACTCCTTGGTTGTTGCTTGGAACTTGAACACCCTTTGCTGATATACGAGTACGTTTCAAATGGGACCCTTTTTGATTACCTTCATCGCCACTCTTGTGGCACAAGGGAACCCCTGAAATTGCACCAAAGACTCAAAATTGCACACCAAACAGCCGAAGGGCTTTCATATCTGCATTCTTCAGCTGTGCCACCCATTTACCACCGAGACGTGAAATCAAGCAACATACTTCTTGATGACAAGCTTGATGCCAAGGTTTCTGACTTTGGCTTATCAAGGCTTGTTGAATTGGCTGAAGAAAACAAGAGCCATATATTCACCAGTGCTCAAGGGACATTAGGGTACCTAGACCCTGATTACTATCGTAACTTTCAGTTGACTGATAAGAGTGATGTTTATAGCTTTGGAGTAGTGCTGATGGAGTTGCTCACTGCTCAGAAAGCTATTGATTTCAACAGGGAAGAAGAGAGTGTGAACTTGGCCATGTATGGGAAGAAGAAAATGATCGAGGAGAAGTTGATGGATGTGGTTGATCCTTTGCTTAAAGAGGGAGCGTGTGATTTGGAATTGGAAACTATGAAGTCATTGGGGTATCTCGCAGTTTCATGCTTGGATGATCAGAGGCAAAAACGGCCTTCCATGAAAGAAGTTGCTGATGAGATTGAAAACCTGATTAAAGTTCTTAAAGGTCAAGTTTCCAAATCATGA 1971 0.486 MVPLSTFMDQPKIITMLTFTTMALLLSRAQATRKCGNCGPNPVPYPLSTGPDCGDPLYKIRCTAGILWFDALAGSSYAIRAIDPFTRRIITRPATLAPKTCVSTDFRSEGMHLNETLPFSVASGNTVFLFNCTTHAPSMNCSPSSACHSYIKEHADFGACGAVGAGACCEYRSGGARKEFAIRLRGGECAAYESFVDFNGTVATVGKRWPESGVGIEWVAPQEPVCKASVDCKELLNSKCGVGPSGGVQRCFCNAGFGWDPINGSCQPQTQTHNTTCTGHGKDSHCKVRKKKKMLVPVVVSVGGIVFVLAITGVIFYKKHNQAKRKEKEAKMNKRKKEVSSVKASALSSRIFTGREIRKATNNFSPENLIGTGGFGEVFKGTFDDGTVFAIKRAKLGSTKGIDQMQNEVRILCQVNHRSLVRLLGCCLELEHPLLIYEYVSNGTLFDYLHRHSCGTREPLKLHQRLKIAHQTAEGLSYLHSSAVPPIYHRDVKSSNILLDDKLDAKVSDFGLSRLVELAEENKSHIFTSAQGTLGYLDPDYYRNFQLTDKSDVYSFGVVLMELLTAQKAIDFNREEESVNLAMYGKKKMIEEKLMDVVDPLLKEGACDLELETMKSLGYLAVSCLDDQRQKRPSMKEVADEIENLIKVLKGQVSKS* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0807 656 ProSitePatterns Protein kinases ATP-binding region signature. 370 392 IPR017441 GO:0005524
Vra8g0807 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 487 499 IPR008271 GO:0004672|GO:0006468
Vra8g0807 656 SUPERFAMILY Protein kinase-like (PK-like) 338 640 IPR011009 -
Vra8g0807 656 CDD STKc_IRAK 370 645 - -
Vra8g0807 656 Gene3D Phosphorylase Kinase; domain 1 321 439 - -
Vra8g0807 656 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 20 24 651 - -
Vra8g0807 656 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 24 651 IPR045274 GO:0007166
Vra8g0807 656 ProSiteProfiles Protein kinase domain profile. 364 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0807 656 SMART serkin_6 364 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0807 656 Gene3D Transferase(Phosphotransferase) domain 1 440 654 - -
Vra8g0807 656 Pfam Protein kinase domain 367 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0807 Vra-Chr8 16455045 16458470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0807 34 656 Receptor kinase-like Gene Family AT5G02070 55.766 0.0 680
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vra8g0807 Pkinase 2.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0807 - - aprc:113862410 1008.44