Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0799 ATGCCAGACATGGATGGCTATAAGCTCCTTGAACATGTTGGGCTGGAAATAGACCTTCATGTAATTATGATGTCTGGTGATAGTACAACAAGTGCTGTCATGAAGGGAATTAGACATGGGGCTTGTGATTATTTGATTAAGCCTGTACGTGAGGAAGAATTGAGGAATATATGGCAACACGTTGTTAGGAAAATCTTGAATGAAAATAAAGAACATGATAATTCTAGCAGCATGGAAGACAGTGATTGGAATAAACGGGGAAATGATGATACAGAATATACTTCTTCTGTTGCTGATAGTTAA 303 0.3762 MPDMDGYKLLEHVGLEIDLHVIMMSGDSTTSAVMKGIRHGACDYLIKPVREEELRNIWQHVVRKILNENKEHDNSSSMEDSDWNKRGNDDTEYTSSVADS* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0799 100 MobiDBLite consensus disorder prediction 68 100 - -
Vra8g0799 100 Gene3D - 1 92 - -
Vra8g0799 100 MobiDBLite consensus disorder prediction 68 89 - -
Vra8g0799 100 Pfam Response regulator receiver domain 1 57 IPR001789 GO:0000160
Vra8g0799 100 PANTHER HOMEODOMAIN-LIKE, CHEY-LIKE SUPERFAMILY-RELATED 1 96 - -
Vra8g0799 100 ProSiteProfiles Response regulatory domain profile. 1 62 IPR001789 GO:0000160
Vra8g0799 100 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 96 IPR045279 GO:0009736
Vra8g0799 100 SUPERFAMILY CheY-like 1 69 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0799 Vra-Chr8 16022898 16023573 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0799 1 96 Response Regulator Gene Family AT4G16110 58.416 2.88e-31 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra8g0799 Response_reg 2.3e-09 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0799 - K14491 vra:111242376 209.149