Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0792 ATGGAAATGGAAGATCACCATCACCACCACCGCCATCACCATCATCAGCATCAGCATCACCACCAGCAGCATCAACATCAACATCAGCACCACTTTGGCGTCAACGATCTCAGGCAAGTCGTCAATGGCCCGAGGACTTCCCACAACGCCTTCCTCTCCATGCCGCCGCACCCAACGGCGGACCTTTTCCCGGGCCACCGGAATCTCTCACCCTTGCCCACTCCCCAACACCAGCAACAACACTACGAGGTTATGATGTTCGGTCGTGACATAATGCCACCTAGCCTTCACGACTTCACTTCCACACCCCACGATTCTGCTGCTGCTGCTGCTGCTGCAGCAGCAGCAGCAGCCACCATGACTCTACCCACTCCACCCACCTTTGATGCCGAGGGTGCAGGTTGCATCGGTGGGGACCCCTCCACTGGAAGATGGCCCAGACAAGAGACCCTCACTCTCCTTGAGATCAGATCTCGCTTGGACCCTAAATTCAAAGAGGCTAACCACAAAGGACCCTTATGGGATGAAATCTCTAGGATCATGTCTGAAGAACATGGATATCAAAGGAGTGGGAAAAAGTGCAGGGAGAAGTTTGAGAATTTGTACAAGTATTACAAGAAGACAAAAGATGGTAAGGCGGGGAGACATGATGGGAAGCATTACCGATTCTTTCGTCAACTTGAAGCCTTGTATGGAGAAAACAGTAGCACAGTTTCAGTCCCAGAAACCAATGTTGTTGGCAGCATTCATTTTCAAGCAAGCAGCCATGACCCCTCCCAGACAAATCAAGATAAGTTTCAGTCTCACAATAGCAAGCATTGTGATAGCCTCAGCCTCACCAACTCCACTAACTTTGATACAACATCATCTGATGATGACAATGACCACCACAGTATGGAGAACGAGTCCATAGAGAAGAGGAGAAAGAGGAACAGTGGGAGGAGTTGGAAGGTGAAGATAAAAGACTTCATTGACTCACAGATGAGGAAGCTTGTGGAGAAGCAGAAGGAGTGGTTGGATAAACTTGTGAAGACACTGGAAGAGAAGGAGAAGGAGAGGATGTTAAGAGAGGAAGAGTGGAGGAAACAAGAGGCAAACAGGTTAGAGAGGGAGCAAAAATTTTGGGCCAAAGAGAGAGCGTGGATTGAAGCAAGGGATGCTGCTCTAATGGAGGCTTTACAAAAGCTAACTGGAAGAGAAATAATGAAGCCTGAAACTCCCAATGATGGTATAAATCTAACGGGAGCTGAAGTTCAAAACCACAGTGAAAACCAGAATAATGAAGATGAGAGTGAAATCTTAAACAGCTGCAATGTTATGAGAGGTGGTGATAGGTGGCCAGAATCTGAAATGACAAGGCTTCAACAGCTGAGAGCTGAGATAGAGACAAGGTTTCCATGCAGCGAAATTTCTGAAGAAGTTTCATGGGAGGTAGTAGCAACCAAAATGGCTTGTTTTGGCTACGAAAGGAGTGCTTTGATGTGCAAAGAGAAATGGGAAAGTATGAGTAACTATCAAAGGGAGGGTGAGAAAGAAGGGAGCAAGAAGTGCAAGGAAAACACTAGAAACTGCTTTTTCTTCAAGAACAATAATGATCATCGACAATCTTCCTTATACGACCAAGGAAGTGCCTACTGTGATGATATCAGTGATCAAGGGAAAGAGATTGAGAGGCTACAAACAAATAATAGTTCTTCACCTTCAAAATCCAATGCTGGAAATGTTGATCACTCTGATAGCTGCTTCCCCTTCTTGATGAGCAGTGAGGGTGGAAACTTGTGGGAGAATTACGGCCTAAAGATCAACAAAGAAAACCAAAACCACTGA 1827 0.4625 MEMEDHHHHHRHHHHQHQHHHQQHQHQHQHHFGVNDLRQVVNGPRTSHNAFLSMPPHPTADLFPGHRNLSPLPTPQHQQQHYEVMMFGRDIMPPSLHDFTSTPHDSAAAAAAAAAAAATMTLPTPPTFDAEGAGCIGGDPSTGRWPRQETLTLLEIRSRLDPKFKEANHKGPLWDEISRIMSEEHGYQRSGKKCREKFENLYKYYKKTKDGKAGRHDGKHYRFFRQLEALYGENSSTVSVPETNVVGSIHFQASSHDPSQTNQDKFQSHNSKHCDSLSLTNSTNFDTTSSDDDNDHHSMENESIEKRRKRNSGRSWKVKIKDFIDSQMRKLVEKQKEWLDKLVKTLEEKEKERMLREEEWRKQEANRLEREQKFWAKERAWIEARDAALMEALQKLTGREIMKPETPNDGINLTGAEVQNHSENQNNEDESEILNSCNVMRGGDRWPESEMTRLQQLRAEIETRFPCSEISEEVSWEVVATKMACFGYERSALMCKEKWESMSNYQREGEKEGSKKCKENTRNCFFFKNNNDHRQSSLYDQGSAYCDDISDQGKEIERLQTNNSSSPSKSNAGNVDHSDSCFPFLMSSEGGNLWENYGLKINKENQNH* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0792 608 SMART sant 442 505 IPR001005 -
Vra8g0792 608 SMART sant 141 204 IPR001005 -
Vra8g0792 608 MobiDBLite consensus disorder prediction 253 311 - -
Vra8g0792 608 Gene3D - 145 207 - -
Vra8g0792 608 Gene3D - 446 508 - -
Vra8g0792 608 CDD GT1 144 209 - -
Vra8g0792 608 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 47 603 - -
Vra8g0792 608 MobiDBLite consensus disorder prediction 289 309 - -
Vra8g0792 608 ProSiteProfiles Myb-like domain profile. 137 202 IPR001005 -
Vra8g0792 608 MobiDBLite consensus disorder prediction 253 288 - -
Vra8g0792 608 Coils Coil 332 359 - -
Vra8g0792 608 ProSiteProfiles Myb-like domain profile. 445 503 IPR001005 -
Vra8g0792 608 MobiDBLite consensus disorder prediction 1 31 - -
Vra8g0792 608 CDD GT1 445 508 - -
Vra8g0792 608 PANTHER - 47 603 - -
Vra8g0792 608 Pfam Myb/SANT-like DNA-binding domain 144 230 IPR044822 -
Vra8g0792 608 Pfam Myb/SANT-like DNA-binding domain 444 528 IPR044822 -
Vra8g0792 608 MobiDBLite consensus disorder prediction 8 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0792 Vra-Chr8 15687828 15691672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0792 27 604 Trihelix Transcription Factor Family AT5G03680 42.834 1.25e-133 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vra8g0792 Myb_DNA-bind_4 1.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0792 - - aprc:113870891 872.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0516 3 5796504 5799916 Vra8g0792 8 15687828 15691672 PCT