Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0787 ATGGAGAACTCGCGTAGACTGTTCGATAGATCGCGAGAGCCTGGACCGAAGAAGCCCCGATTGATGGAAGAGCTGGATCGGGCTCCGAATTCTGGTGCGAGACAGTTTCCTCAGCTACAAGTGATTTCTGGGGCTTCGACGTTACCGTCTGCAAGGTTTAGAACAAACGAAAGAGACGTTGAAAGCAATGAATTTGGTCGCCGGGGTGGTGCTGGAGGTGGCGGTTATCAGCCCCAGCCACTGCCATTTCAGGAGCTTGTTACTCAGTATAAGGCAGCTCTAGCAGAACTTACTTTCAACTCGAAACCGATAATTACCAACTTGACTATCATTGCAGGGGAGAACCAAGCTGCGGAGAAGGCCATTGCAGCAACTGTTTGTGCTAACATTCTAGAGGTTCCTAGTGATCAAAAGCTGCCATCACTTTATCTCTTAGACAGTATTGTTAAGAACATTGGGCGGGATTATATAAAATACTTCGCTGCCAGGCTACCTGAGGTATTCTGCAAAGCATACAGACAGGTTGATCCTTCAGTCCATCAAAGTATGAGGCATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGACCCTTCAGATTATTGAGAAAGAACTGGGCTTCACTTCTGCAGTCAATGGCTCATCTGCTTCTTCTACACTCAGGAGTGATTCACAGTCACAACGTCCACCTCATAGTATTCATGTTAATCCCAAGTATTTAGAAAGACAACGTCTTCAGCAGTCCAGCAGGACTAAAGGAGTTGATGATATGACTGGAGCAATTTCAAACTCAAATGATGACCAAGAGATTCCTGGTAGAACTTTAGGTGTTTTACGATCATGGGTGGATCATAATGTTACTGTTAGCGTCAATGCACGTGAAAATGATCATCGTGCTCGAAGAGATGCATTCAATGATTCTGTTCCAGAAAAGAGCACTAGTGCATCCTATGGAAGCAATGAACTTGGTTCCAATATTTCAAGGAATATAGGCTTGGGTATCAGCCGACCTAGTGGTAGGGTGACCGAGTCAGGACATGACAAAGGTTGGTACAACAAATCTGGTGTTGCTGCGGGGACCATGCCCGGGCAAAGAAATGGTTTGAGTCACAAGTATAGTTTTTCAAGTACTGAAGCACCAAAGTCCATGGTTTTGGATGCACATCATCAACCGGCACATAATATAACTAGCACACAGAGCAGTGTGATCTCAAATAGCTGGAAAAATTCCGAGGAAGAGGAGTACACATGGGATGAGATGAACTCTGGCTTGACTGGTCATGGTACATCAATTGTTAGCAGCTTGAGCAAAGATGCTTGGACTGCTGATGATGAGAATTTGGAAGTTGAAGATCGCATCCAAGTCAGAAATCCTTTTGTGGTAAATGCTGATAGAGAATTAGCTATTGAATCTCAAGCCAATGAAAAGAAACAATTTCCTGCATCTCAACATCATTCATCACTATCATGGCCATTGCAGGAGCAGCATTCTATTCATGAGTTGAATCGAAAAGCTGGTCACTCCAGCAGATTTGTGTCCACACTTGGTGCCATACCGACCAATACAAATGCCTCTACTGCCAGAATGGGGAGTCGGCCATTCCTGTCAAGTGCAACCATAGGATTGCCAGGAATTGCAGGACCCTTTCATTCTTTGGGAGCTGAAAACCCTTCAGGGCAGTCACCTTTGCAGCGGAGGTCTCCATCACCGCCAGGTCCATTCTCTTCAATGACTTTTCAGGCAAGGCATCAGCAGCAATTGGGCACTTCTCTTGAGGTCACTGTTAAGACTGAGAAGCCACCTGTGTCCAAGGTTCCTTTAGTCAGAGAAACTAAAAGTAGCATGAGTACAGGGAATCTTCCAACTCGATTAGGTGTTCGGCCTTCAAGAACAGGTGGTCCTTCCCCTGCCACATTAATTTCTTCAGTGTCCACAAGTGCATTACCATCTTCATTAGGTCCTTCTGGTGATAATTCATCTGCTCTCTCAAAAATGCCTCAAAGAAAGGCTGGACAACCACCTAGGTTATCTACTCTACCATCTGCTTCCTCTAATGTCAGCAGTGCCTCTGCCCAGACAAGTGATACCAGTAATAACTTGAATCCAATTGCCAACCTTTTAAGCTCTTTAGTTGCAAAAGGCTTGATATCTGCAGAAACAGAATCAACATCTAAGGTGCCCTCTGAGTTGCTGAATCGACTGGAAGAAGAAAGCGATAGCATTACCACCGGTAACTCTTTGCCTGTGGCCTCAATTTCTGGTTCTGCAGCTGTTCCAGTCCCTTCAATCAAAGATGAGGTTGATGACACTGCAAGAACGCCCCTATCCTTGTCTGAATCAACCAGTCCAGGAGTTGTAAATCTCATTGGCTTTGAGTTTAAGCATGATGTATTACGAGAATTCCATTCATCTGTAATTAGTGGATTATTTGATGATCTTCCACATCATTGCAGCATTTGTGGCTTTAGACTTAGATTCCAAAAGCAGTTCAATAGACACTTGGAGTGGCATGCCACAAGGGATAGAGAAGAGAATGGTTTAACTAAGGCATCGAGATGGTATCTTAAGTCAAGTGACTGGATTGTTGGCAAGGCTGAATATGTATCAGAGAATGAGGCTGATTCTGTAGATACATATGGCAATGAAGCAGACAGAAGTCAAGAGGATGCTATGGTTGTAGCAGATGAAAACCAATGCTTGTGTGTGTTGTGCGGTGAGCTATTTGAGGATTTTTATTGTGAGGAAAGTGGGGAATGGATGTTCAAAGGAGCTGTTTACTTTGCTAACTCTGATAGCAACAGTGAGATGGGAACCGGAGATATGGGTACTAGAAGGGGTCCCATCATTCATGCAAATTGCTTATCAGATAACTTGATTTCATGTGTCCCTGAGATGGGACAGGATTAA 2910 0.4433 MENSRRLFDRSREPGPKKPRLMEELDRAPNSGARQFPQLQVISGASTLPSARFRTNERDVESNEFGRRGGAGGGGYQPQPLPFQELVTQYKAALAELTFNSKPIITNLTIIAGENQAAEKAIAATVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVHQSMRHLFGTWKGVFPPQTLQIIEKELGFTSAVNGSSASSTLRSDSQSQRPPHSIHVNPKYLERQRLQQSSRTKGVDDMTGAISNSNDDQEIPGRTLGVLRSWVDHNVTVSVNARENDHRARRDAFNDSVPEKSTSASYGSNELGSNISRNIGLGISRPSGRVTESGHDKGWYNKSGVAAGTMPGQRNGLSHKYSFSSTEAPKSMVLDAHHQPAHNITSTQSSVISNSWKNSEEEEYTWDEMNSGLTGHGTSIVSSLSKDAWTADDENLEVEDRIQVRNPFVVNADRELAIESQANEKKQFPASQHHSSLSWPLQEQHSIHELNRKAGHSSRFVSTLGAIPTNTNASTARMGSRPFLSSATIGLPGIAGPFHSLGAENPSGQSPLQRRSPSPPGPFSSMTFQARHQQQLGTSLEVTVKTEKPPVSKVPLVRETKSSMSTGNLPTRLGVRPSRTGGPSPATLISSVSTSALPSSLGPSGDNSSALSKMPQRKAGQPPRLSTLPSASSNVSSASAQTSDTSNNLNPIANLLSSLVAKGLISAETESTSKVPSELLNRLEEESDSITTGNSLPVASISGSAAVPVPSIKDEVDDTARTPLSLSESTSPGVVNLIGFEFKHDVLREFHSSVISGLFDDLPHHCSICGFRLRFQKQFNRHLEWHATRDREENGLTKASRWYLKSSDWIVGKAEYVSENEADSVDTYGNEADRSQEDAMVVADENQCLCVLCGELFEDFYCEESGEWMFKGAVYFANSDSNSEMGTGDMGTRRGPIIHANCLSDNLISCVPEMGQD* 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0787 969 MobiDBLite consensus disorder prediction 242 271 - -
Vra8g0787 969 Gene3D - 82 207 IPR008942 -
Vra8g0787 969 MobiDBLite consensus disorder prediction 217 233 - -
Vra8g0787 969 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 1 572 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Vra8g0787 969 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 573 963 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Vra8g0787 969 MobiDBLite consensus disorder prediction 675 701 - -
Vra8g0787 969 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 573 963 - -
Vra8g0787 969 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 1 572 - -
Vra8g0787 969 CDD CID_Pcf11 87 199 - -
Vra8g0787 969 ProSiteProfiles CID domain profile. 82 210 IPR006569 -
Vra8g0787 969 MobiDBLite consensus disorder prediction 571 594 - -
Vra8g0787 969 MobiDBLite consensus disorder prediction 293 323 - -
Vra8g0787 969 MobiDBLite consensus disorder prediction 217 272 - -
Vra8g0787 969 MobiDBLite consensus disorder prediction 610 625 - -
Vra8g0787 969 MobiDBLite consensus disorder prediction 549 701 - -
Vra8g0787 969 MobiDBLite consensus disorder prediction 477 496 - -
Vra8g0787 969 MobiDBLite consensus disorder prediction 635 667 - -
Vra8g0787 969 MobiDBLite consensus disorder prediction 1 78 - -
Vra8g0787 969 SMART 558neu5 85 207 IPR006569 -
Vra8g0787 969 MobiDBLite consensus disorder prediction 293 308 - -
Vra8g0787 969 SUPERFAMILY ENTH/VHS domain 85 204 IPR008942 -
Vra8g0787 969 MobiDBLite consensus disorder prediction 33 53 - -
Vra8g0787 969 MobiDBLite consensus disorder prediction 309 323 - -
Vra8g0787 969 MobiDBLite consensus disorder prediction 1 27 - -
Vra8g0787 969 ProSitePatterns Zinc finger C2H2 type domain signature. 818 838 IPR013087 -
Vra8g0787 969 Pfam CID domain 91 200 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0787 Vra-Chr8 15499423 15506420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0787 790 954 C2H2 Transcription Factor Family AT4G04885 37.500 1.05e-33 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0787 K14400 - gmx:100807857 1518.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0512 3 5760079 5766218 Vra8g0787 8 15499423 15506420 PCT