Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0785 ATGAACCCTACCGATGACAACTCTCCCAAGCCCTTGGAGGTTCTGCAGATGAACCCGGTTCCGCCGTTCTTGTCCAAGACCTTCGACCTCGTCGATGACCCCACTCTCGACCCCATCATTTCCTGGGCCTCCTCCGGCTTTAGCTTCGTCGTCTGGGACCCTCTGGAGTTCGCCAGAGTCGTCTTGCCGCGACATTTCAAGCACAATAACTTCTCCAGTTTCGTTCGCCAGCTTAATACTTATGGATTCCGCAAGATTGACACAGACAAGTGGGAGTTTTTCAATGAAGCATTCCAGCGATCGAAGAAGCACTTGCTGAAGAACATACAAAGACGTAGATCACCACAATCCCAGCAGGTTGGTAGCTATATTGGAATTGGATCTCCTACCACTGAGGCAGGGAGATCCGAGGTTGAGGTTGAGATAGAAAAGCTTAGGAAAGAAAGGACTATCTTGATGGAAGAGGTGGTTGATTTGCAGCAAGAGCAACGAAGAACTGCTAACCGTGCAGGAGAAGTGAATCAAAGGCTGCAATCTGCAGAACAAAGGCAGAAAAAAATGGTTTCTTTCCTGGCCAAGTTGATCCAAAACCCAGCCTTTTTAGCCCGCCTAAGGCAAAAGAAAGAACAAAGAGAAATAGATTCTCCAAGAGTGGTAAGGAAGTTTGTCAAGCAGCACCAACATGAAACTGGAACAGCAGAAACTCTCCAAGAAGGACAGATAGTGAGGTACCAACCTGATTGGACAAATATAGGCATGTCTTCTGAATCTCCAAAACTAAGTCCAGTTTCCATTGAACAGTCTCCTCACTACCTTTCACAGGGTTTGGCGGGAGAAATGATTGGAGGTGCACAAGATCTCACTGTTCAAATTCAGAATATTGTAACAGATGATTTGGCTTCAGTGCACAGGATCACATCACCTCAAGAAACGATGATTGGAGAAGGATCATCTGAAGACCTCCTTTTCAAAGGGAAGAGTGTTATGAGCCCTAGTCTAGAACTACCTCCAGATTATTTTACTTCCTTCCCAGAGGTTTTGACCCAGGAGAAAGGCTTTCAAGATTTTTCTGCTCTTGGAGCTGAAGACATTATCAAGCTTGAAGATATATGGGATTCTGGCCTCAATCTTAGTGGTGCTGGTTCAAGCTGTGGGAATGAGCTGTGGGGAAATCCTATGAATTATGAACATGTTCAAGAGTTTGGAATAACAAGTGACATGTCTGAGTCAGACATCTGGGATATTGGCTCTGGAAGTTTGGGAATTGATAAGTGGCCAGGTGATGAACCTTCTGTTGGTGAACTAGATGATCAATCTGGTCAGCCAAAAGAAGATAGGCCTCAGAATCTTGATCCATAG 1359 0.4533 MNPTDDNSPKPLEVLQMNPVPPFLSKTFDLVDDPTLDPIISWASSGFSFVVWDPLEFARVVLPRHFKHNNFSSFVRQLNTYGFRKIDTDKWEFFNEAFQRSKKHLLKNIQRRRSPQSQQVGSYIGIGSPTTEAGRSEVEVEIEKLRKERTILMEEVVDLQQEQRRTANRAGEVNQRLQSAEQRQKKMVSFLAKLIQNPAFLARLRQKKEQREIDSPRVVRKFVKQHQHETGTAETLQEGQIVRYQPDWTNIGMSSESPKLSPVSIEQSPHYLSQGLAGEMIGGAQDLTVQIQNIVTDDLASVHRITSPQETMIGEGSSEDLLFKGKSVMSPSLELPPDYFTSFPEVLTQEKGFQDFSALGAEDIIKLEDIWDSGLNLSGAGSSCGNELWGNPMNYEHVQEFGITSDMSESDIWDIGSGSLGIDKWPGDEPSVGELDDQSGQPKEDRPQNLDP* 453
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0785 452 Coils Coil 135 162 - -
Vra8g0785 452 PRINTS Heat shock factor (HSF) domain signature 23 46 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra8g0785 452 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra8g0785 452 PRINTS Heat shock factor (HSF) domain signature 74 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra8g0785 452 Pfam HSF-type DNA-binding 23 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra8g0785 452 SUPERFAMILY "Winged helix" DNA-binding domain 19 112 IPR036390 -
Vra8g0785 452 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-3 14 444 - -
Vra8g0785 452 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 444 IPR027725 -
Vra8g0785 452 SMART hsfneu3 19 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra8g0785 452 ProSitePatterns HSF-type DNA-binding domain signature. 62 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra8g0785 452 MobiDBLite consensus disorder prediction 418 452 - -
Vra8g0785 452 MobiDBLite consensus disorder prediction 438 452 - -
Vra8g0785 452 Gene3D - 15 113 IPR036388 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vra8g0785 Vra-Chr8 15472528 15475698 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0785 9 415 HSF AT5G03720 45.433 1.57e-102 310
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vra8g0785 HSF_DNA-bind 1.8e-30 CL0123
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0785 K09419 - gmx:100780835 746.117