Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra8g0785 | ATGAACCCTACCGATGACAACTCTCCCAAGCCCTTGGAGGTTCTGCAGATGAACCCGGTTCCGCCGTTCTTGTCCAAGACCTTCGACCTCGTCGATGACCCCACTCTCGACCCCATCATTTCCTGGGCCTCCTCCGGCTTTAGCTTCGTCGTCTGGGACCCTCTGGAGTTCGCCAGAGTCGTCTTGCCGCGACATTTCAAGCACAATAACTTCTCCAGTTTCGTTCGCCAGCTTAATACTTATGGATTCCGCAAGATTGACACAGACAAGTGGGAGTTTTTCAATGAAGCATTCCAGCGATCGAAGAAGCACTTGCTGAAGAACATACAAAGACGTAGATCACCACAATCCCAGCAGGTTGGTAGCTATATTGGAATTGGATCTCCTACCACTGAGGCAGGGAGATCCGAGGTTGAGGTTGAGATAGAAAAGCTTAGGAAAGAAAGGACTATCTTGATGGAAGAGGTGGTTGATTTGCAGCAAGAGCAACGAAGAACTGCTAACCGTGCAGGAGAAGTGAATCAAAGGCTGCAATCTGCAGAACAAAGGCAGAAAAAAATGGTTTCTTTCCTGGCCAAGTTGATCCAAAACCCAGCCTTTTTAGCCCGCCTAAGGCAAAAGAAAGAACAAAGAGAAATAGATTCTCCAAGAGTGGTAAGGAAGTTTGTCAAGCAGCACCAACATGAAACTGGAACAGCAGAAACTCTCCAAGAAGGACAGATAGTGAGGTACCAACCTGATTGGACAAATATAGGCATGTCTTCTGAATCTCCAAAACTAAGTCCAGTTTCCATTGAACAGTCTCCTCACTACCTTTCACAGGGTTTGGCGGGAGAAATGATTGGAGGTGCACAAGATCTCACTGTTCAAATTCAGAATATTGTAACAGATGATTTGGCTTCAGTGCACAGGATCACATCACCTCAAGAAACGATGATTGGAGAAGGATCATCTGAAGACCTCCTTTTCAAAGGGAAGAGTGTTATGAGCCCTAGTCTAGAACTACCTCCAGATTATTTTACTTCCTTCCCAGAGGTTTTGACCCAGGAGAAAGGCTTTCAAGATTTTTCTGCTCTTGGAGCTGAAGACATTATCAAGCTTGAAGATATATGGGATTCTGGCCTCAATCTTAGTGGTGCTGGTTCAAGCTGTGGGAATGAGCTGTGGGGAAATCCTATGAATTATGAACATGTTCAAGAGTTTGGAATAACAAGTGACATGTCTGAGTCAGACATCTGGGATATTGGCTCTGGAAGTTTGGGAATTGATAAGTGGCCAGGTGATGAACCTTCTGTTGGTGAACTAGATGATCAATCTGGTCAGCCAAAAGAAGATAGGCCTCAGAATCTTGATCCATAG | 1359 | 0.4533 | MNPTDDNSPKPLEVLQMNPVPPFLSKTFDLVDDPTLDPIISWASSGFSFVVWDPLEFARVVLPRHFKHNNFSSFVRQLNTYGFRKIDTDKWEFFNEAFQRSKKHLLKNIQRRRSPQSQQVGSYIGIGSPTTEAGRSEVEVEIEKLRKERTILMEEVVDLQQEQRRTANRAGEVNQRLQSAEQRQKKMVSFLAKLIQNPAFLARLRQKKEQREIDSPRVVRKFVKQHQHETGTAETLQEGQIVRYQPDWTNIGMSSESPKLSPVSIEQSPHYLSQGLAGEMIGGAQDLTVQIQNIVTDDLASVHRITSPQETMIGEGSSEDLLFKGKSVMSPSLELPPDYFTSFPEVLTQEKGFQDFSALGAEDIIKLEDIWDSGLNLSGAGSSCGNELWGNPMNYEHVQEFGITSDMSESDIWDIGSGSLGIDKWPGDEPSVGELDDQSGQPKEDRPQNLDP* | 453 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra8g0785 | 452 | Coils | Coil | 135 | 162 | - | - | |
Vra8g0785 | 452 | PRINTS | Heat shock factor (HSF) domain signature | 23 | 46 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Vra8g0785 | 452 | PRINTS | Heat shock factor (HSF) domain signature | 61 | 73 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Vra8g0785 | 452 | PRINTS | Heat shock factor (HSF) domain signature | 74 | 86 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Vra8g0785 | 452 | Pfam | HSF-type DNA-binding | 23 | 112 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Vra8g0785 | 452 | SUPERFAMILY | "Winged helix" DNA-binding domain | 19 | 112 | IPR036390 | - | |
Vra8g0785 | 452 | PANTHER | HEAT STRESS TRANSCRIPTION FACTOR A-3 | 14 | 444 | - | - | |
Vra8g0785 | 452 | PANTHER | HEAT SHOCK TRANSCRIPTION FACTOR | 14 | 444 | IPR027725 | - | |
Vra8g0785 | 452 | SMART | hsfneu3 | 19 | 112 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Vra8g0785 | 452 | ProSitePatterns | HSF-type DNA-binding domain signature. | 62 | 86 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Vra8g0785 | 452 | MobiDBLite | consensus disorder prediction | 418 | 452 | - | - | |
Vra8g0785 | 452 | MobiDBLite | consensus disorder prediction | 438 | 452 | - | - | |
Vra8g0785 | 452 | Gene3D | - | 15 | 113 | IPR036388 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra8g0785 | Vra-Chr8 | 15472528 | 15475698 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra8g0785 | 9 | 415 | HSF | AT5G03720 | 45.433 | 1.57e-102 | 310 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HSF | Vra8g0785 | HSF_DNA-bind | 1.8e-30 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra8g0785 | K09419 | - | gmx:100780835 | 746.117 |