LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra8g0785	ATGAACCCTACCGATGACAACTCTCCCAAGCCCTTGGAGGTTCTGCAGATGAACCCGGTTCCGCCGTTCTTGTCCAAGACCTTCGACCTCGTCGATGACCCCACTCTCGACCCCATCATTTCCTGGGCCTCCTCCGGCTTTAGCTTCGTCGTCTGGGACCCTCTGGAGTTCGCCAGAGTCGTCTTGCCGCGACATTTCAAGCACAATAACTTCTCCAGTTTCGTTCGCCAGCTTAATACTTATGGATTCCGCAAGATTGACACAGACAAGTGGGAGTTTTTCAATGAAGCATTCCAGCGATCGAAGAAGCACTTGCTGAAGAACATACAAAGACGTAGATCACCACAATCCCAGCAGGTTGGTAGCTATATTGGAATTGGATCTCCTACCACTGAGGCAGGGAGATCCGAGGTTGAGGTTGAGATAGAAAAGCTTAGGAAAGAAAGGACTATCTTGATGGAAGAGGTGGTTGATTTGCAGCAAGAGCAACGAAGAACTGCTAACCGTGCAGGAGAAGTGAATCAAAGGCTGCAATCTGCAGAACAAAGGCAGAAAAAAATGGTTTCTTTCCTGGCCAAGTTGATCCAAAACCCAGCCTTTTTAGCCCGCCTAAGGCAAAAGAAAGAACAAAGAGAAATAGATTCTCCAAGAGTGGTAAGGAAGTTTGTCAAGCAGCACCAACATGAAACTGGAACAGCAGAAACTCTCCAAGAAGGACAGATAGTGAGGTACCAACCTGATTGGACAAATATAGGCATGTCTTCTGAATCTCCAAAACTAAGTCCAGTTTCCATTGAACAGTCTCCTCACTACCTTTCACAGGGTTTGGCGGGAGAAATGATTGGAGGTGCACAAGATCTCACTGTTCAAATTCAGAATATTGTAACAGATGATTTGGCTTCAGTGCACAGGATCACATCACCTCAAGAAACGATGATTGGAGAAGGATCATCTGAAGACCTCCTTTTCAAAGGGAAGAGTGTTATGAGCCCTAGTCTAGAACTACCTCCAGATTATTTTACTTCCTTCCCAGAGGTTTTGACCCAGGAGAAAGGCTTTCAAGATTTTTCTGCTCTTGGAGCTGAAGACATTATCAAGCTTGAAGATATATGGGATTCTGGCCTCAATCTTAGTGGTGCTGGTTCAAGCTGTGGGAATGAGCTGTGGGGAAATCCTATGAATTATGAACATGTTCAAGAGTTTGGAATAACAAGTGACATGTCTGAGTCAGACATCTGGGATATTGGCTCTGGAAGTTTGGGAATTGATAAGTGGCCAGGTGATGAACCTTCTGTTGGTGAACTAGATGATCAATCTGGTCAGCCAAAAGAAGATAGGCCTCAGAATCTTGATCCATAG	1359	0.4533	MNPTDDNSPKPLEVLQMNPVPPFLSKTFDLVDDPTLDPIISWASSGFSFVVWDPLEFARVVLPRHFKHNNFSSFVRQLNTYGFRKIDTDKWEFFNEAFQRSKKHLLKNIQRRRSPQSQQVGSYIGIGSPTTEAGRSEVEVEIEKLRKERTILMEEVVDLQQEQRRTANRAGEVNQRLQSAEQRQKKMVSFLAKLIQNPAFLARLRQKKEQREIDSPRVVRKFVKQHQHETGTAETLQEGQIVRYQPDWTNIGMSSESPKLSPVSIEQSPHYLSQGLAGEMIGGAQDLTVQIQNIVTDDLASVHRITSPQETMIGEGSSEDLLFKGKSVMSPSLELPPDYFTSFPEVLTQEKGFQDFSALGAEDIIKLEDIWDSGLNLSGAGSSCGNELWGNPMNYEHVQEFGITSDMSESDIWDIGSGSLGIDKWPGDEPSVGELDDQSGQPKEDRPQNLDP*	453

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra8g0785	452	Coils	Coil	135	162	-	-
	Vra8g0785	452	PRINTS	Heat shock factor (HSF) domain signature	23	46	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra8g0785	452	PRINTS	Heat shock factor (HSF) domain signature	61	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra8g0785	452	PRINTS	Heat shock factor (HSF) domain signature	74	86	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra8g0785	452	Pfam	HSF-type DNA-binding	23	112	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra8g0785	452	SUPERFAMILY	"Winged helix" DNA-binding domain	19	112	IPR036390	-
	Vra8g0785	452	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-3	14	444	-	-
	Vra8g0785	452	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	14	444	IPR027725	-
	Vra8g0785	452	SMART	hsfneu3	19	112	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra8g0785	452	ProSitePatterns	HSF-type DNA-binding domain signature.	62	86	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra8g0785	452	MobiDBLite	consensus disorder prediction	418	452	-	-
	Vra8g0785	452	MobiDBLite	consensus disorder prediction	438	452	-	-
	Vra8g0785	452	Gene3D	-	15	113	IPR036388	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra8g0785	Vra-Chr8	15472528	15475698	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra8g0785	9	415	HSF	AT5G03720	45.433	1.57e-102	310

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Vra8g0785		HSF_DNA-bind	1.8e-30	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra8g0785	K09419		-	gmx:100780835	746.117