Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0752 ATGGATTCTGCTCCAAATCTTTCTTCCCATTCTCAAGACCACACCTCCACTCCGCACTGCCGTGTTAAGGGCTTTCTCGTCTACACTCGCCGCAAGCGTTCTCTTCATTCCACCAATGATGCAGTCAAAAGACTCAAAACTGAAGAAATTAAAACCGAAGAATCTCATCACGAGGACTCCGTTTTCAAGCTCCCCAAAATGGAGTCTCGAGAGGACCCCAATTCTGCCGAGGAATTAACCGAGACTGAATTGAATACTCCACAGAAGAAGATTGTGGTGGTCAGTAAGAAACCCGTCACCGTCAAGGAGCTCTTTGAAACTGGTTTGCTAGAGGGCGTTCCGGTCGTTTATGTTGGTTGCAAGAAGGATTCAACTTCGGAATTGAAGGGTGTAATTACTGATGGTGGGATCTTGTGCTCGTGCCGTCTGTGCAATGGATGTAGGGTTATTCCACCTTCCCAATTTGAGATTCATGCATGCAACATATATAAGAGGGCAGCACAATATATTTGCCTTGAAAATGGGAAGAGCCTGCTTGAACTATTGAGAGCATGCAGGGCAGCCCCACTACATACTTTGGAGACGACCATTCAAAATTTTGTTAGTTCTCCACCTGAGGAAAAATATTTTACGTGCAAAAGTTGCAGAGGATGTTTTCCTGCTTCCAATGTGGAAAGAGTGGGCCTTTTGTGTCTATCATGTGTGGAATCAAGAAAATCTGAAAGCAGTTCTATTCATGCTGTAGGCAAAAGAGTCAGGTCCCCTCGGCCAGTATTATTCTCCCGTTCATGTTCTTGTTGTACTTCTGAACTATGTATTTCTCCTCAAACTAAGAGACACTGGAAGACAAGAACAAAATCATCAAAACTATCATTAAAATTGAAGACTGCTCCAATTACTTCAAAGTGTTTATCTCCACAACATAAAAATCAGTGGAGGATCTCTAAAAGGTATCAGCGAATACATAAATTGATTTTTGAAGAGGATGGATTGCCTAATGGGGCTGAAGTAGCTTATTATGCACGTGGACAGAAACTGCTTGAGGGTATCAAAACACGCTATGGAATTGTCTGTCGATGCTGCAACACTGAGATCAGCCCCTCACAGTTTGAAGTCCATGCAGGCTGGGCTTCTCGCAGGAAACCTTATGCATACATCTACACATCGAATGGGGTGTCACTCCATGAGTTAGCTATATTTCTCTCGAAAGATCACAAATGCACTACAAAGCAGAATGATTATGCATGTGTAGTTTGTTGGGATGGTGGAAACCTGTTGCTCTGTGATGGATGTCCAAGGGCATTTCATAAAGAATGTGCATCTGTATCAAGCATTCCCCGGGGTGAGTGGTACTGTCAAATTTGTCAACACACGTTTCTCAGAGAAAGGCCTGTGTTATACAATGCTGATGCTGTGGCAGCTGGAAGGGTAGAAGGTGTTGATCCCATCGAGGAGATTGCCAAGAGATGCATTCGCATAGTAAAAGACATAGGAGCTGAGATTGGTGGATGTGTTTTATGCAGGAGTTCTGATTTCAGCAGATCAGGATTTGGTCCTCGTACAATTATAATCTGTGATCAGTGTGAAAAGGAATATCATGTTGGTTGCTTGCGGGATCGTAAGATGGCATTTCTGAAGGAGTTGCCAGAAGGGGATTGGCTTTGTTGCAACGATTGCACCAGAATACATACTACTTTGGAGAATCTCCTGGTTACGGGGGCTGAGAGACTCCCTGAATCTCTTTTGGATGTTATAAAGAAGAAGCATGTAGAAAGATGTTTAGAACCCCTTAATGAGATTGATGTAAGATGGAAACTTCTTAATGGAAAAGTTGCGTCTCCTGAAACTAGGCCATTGCTTTTGGAGGCAGTGGCCATGTTTAATGAATGCTTTGATCCTATAGTTGATCCAGCTGCTGGACGTGACCTCATTCCTGCCATGGTTTATGGAAGGAATTTGCAGACTCAAGATTTTGGAGGAATGTATTGTGCATTATTGATCGTCAATTCATCGGTGGTATCTGCGGGCATGCTTCGAATTTTTGGTGAGGACATTGCCGAACTCCCCATAGTTGCAACAAGATATAAGAACCGTGGGAAGGGCTACTTCCAAACACTTTTCTCGTGCATTGAGAGGCTGCTGGCTTTCTTGAAAGTGAAAAATCTTGTGCTACCAGCTGCTGAAGAAGCAGAATCTATATGGACAGAAAAATTCGGATTTAGCAAGATGAAACCTGATGAGCTTACCAACTATAGAATGAACTGCCATCAGATCATGGCATTTAAGGGGACTATGATGCTTCATAAAACGGTACCTGGATGTCGTGTCATCAATACTCAATCATGA 2346 0.4314 MDSAPNLSSHSQDHTSTPHCRVKGFLVYTRRKRSLHSTNDAVKRLKTEEIKTEESHHEDSVFKLPKMESREDPNSAEELTETELNTPQKKIVVVSKKPVTVKELFETGLLEGVPVVYVGCKKDSTSELKGVITDGGILCSCRLCNGCRVIPPSQFEIHACNIYKRAAQYICLENGKSLLELLRACRAAPLHTLETTIQNFVSSPPEEKYFTCKSCRGCFPASNVERVGLLCLSCVESRKSESSSIHAVGKRVRSPRPVLFSRSCSCCTSELCISPQTKRHWKTRTKSSKLSLKLKTAPITSKCLSPQHKNQWRISKRYQRIHKLIFEEDGLPNGAEVAYYARGQKLLEGIKTRYGIVCRCCNTEISPSQFEVHAGWASRRKPYAYIYTSNGVSLHELAIFLSKDHKCTTKQNDYACVVCWDGGNLLLCDGCPRAFHKECASVSSIPRGEWYCQICQHTFLRERPVLYNADAVAAGRVEGVDPIEEIAKRCIRIVKDIGAEIGGCVLCRSSDFSRSGFGPRTIIICDQCEKEYHVGCLRDRKMAFLKELPEGDWLCCNDCTRIHTTLENLLVTGAERLPESLLDVIKKKHVERCLEPLNEIDVRWKLLNGKVASPETRPLLLEAVAMFNECFDPIVDPAAGRDLIPAMVYGRNLQTQDFGGMYCALLIVNSSVVSAGMLRIFGEDIAELPIVATRYKNRGKGYFQTLFSCIERLLAFLKVKNLVLPAAEEAESIWTEKFGFSKMKPDELTNYRMNCHQIMAFKGTMMLHKTVPGCRVINTQS* 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0752 781 Pfam Tify domain binding domain 130 185 IPR032308 -
Vra8g0752 781 Pfam Tify domain binding domain 351 399 IPR032308 -
Vra8g0752 781 MobiDBLite consensus disorder prediction 47 82 - -
Vra8g0752 781 MobiDBLite consensus disorder prediction 47 77 - -
Vra8g0752 781 ProSitePatterns Zinc finger PHD-type signature. 416 455 IPR019786 -
Vra8g0752 781 SUPERFAMILY FYVE/PHD zinc finger 401 458 IPR011011 -
Vra8g0752 781 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 659 745 IPR016181 -
Vra8g0752 781 SUPERFAMILY FYVE/PHD zinc finger 498 558 IPR011011 -
Vra8g0752 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 502 562 IPR013083 -
Vra8g0752 781 SMART PHD_3 415 456 IPR001965 -
Vra8g0752 781 SMART PHD_3 503 560 IPR001965 -
Vra8g0752 781 PANTHER AUTOIMMUNE REGULATOR 43 777 - -
Vra8g0752 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 401 477 IPR013083 -
Vra8g0752 781 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 43 777 - -
Vra8g0752 781 ProSiteProfiles Zinc finger PHD-type profile. 413 458 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0752 Vra-Chr8 14194293 14204963 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0752 90 778 PHD Transcription Factor Family AT2G36720 49.863 0.0 739
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0752 - - gmx:100798276 1363.59