Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0743 ATGGCCGTTCCCGCGACAGTCGCCGCCACGAAGGCTTCACTTTACGTTGGAGATCTTCACCCTGACGTCACCGAAACCCAATTATTCTTGGCCTTCCAGGAATTCGAAAGCCTCTCTTCCGTTCGCGTCTGCAGGGATTCCATGACGAAGACGTCGCTCCGTTACGGTTACGTCAACTTTATGTCTCAGCAAGACGCAATTCGAGCTATCAAGGTTAAAAATAATTCTTATCTCTTTGGAAAAGTGATGAGGGTCATGTGGTCACATCGCGATCCTAATGCAAGGAAAAGTGGAAGAGGGAATGTGTTTGTTAAGAACTTGGCAGAATCAATAGATAATGCGGTGCTACATGATTTATTTCAAAAATATGGGAATGTTTTGTCCAGTAAAGTAGTCGTGTATGACGATGGGAAGAGCAAAGGGTATGGCTTTGTTCAATTTGAGTCAGAGGAATCTGCAAACAGTGCCATTGAGAACCTTAATGGCTCTACTGTGAGAGACAAGCAGATATATGTTGGGAAGTTTGTCAGAAAAGGTGACCGCATTGTGCCTGGTAATGATTCCAAGTATACAAATTTGTACATTAAAAACTTGGATTTGGATATTACGGAAGCACTTCTTCAGGAAAAGTTCTCCCCTTTTGGAAAAATTATTAGCTTGGCTATTGCAAAGGATGACAATGGGCTATCCAAGGGTTTTGCATTTGTTAACTATGATAGGCCAGATGATGCTAGAAAGGCGATGGAAGCAATGAATGGATCGCAATTTGGTTCAAAGAATCTTTATGTTGCTAGGGCACAGAAGAAGGCTGAACGTGAGCAAATCTTGCATAATCAATTTGAGGAAAAACGCAAGGAGCAAATACTGAAATCAAAGGGCTCTAACCTGTATCTGAAGAACATTGATGACACTGTTAGTGAAAAAGAACTACGAGTTCTGTTTAGTTCATGTGGCAGAATAACTTCTGTAAAAGTTATGCGAAATGAAAAAGGGATAAGCAAGGGGTTTGGTTTTGTCTGCTTCTCCAACCCTGAGGAGGCTAATAAAGCTGTGAGCACTTTTTATGGATGCATGTTCCATGGTAAGCCACTGTATATTGCTTTCGCTCAGAGGAAAGAGGATAGGAAAACACAGTTGAAGCTCCACTATGCACCACAACAAGCACGATTGAACGGATCTTCTGCCGCAGTTGTCCCTGGTGGTTTTTCATCTTTCTTCTATCCAAATGTTACTTCACATATGCTTCAATCTGGGCTTTTGTATCAACCTCTGGGTTTGGGACCAGGATGGAGGGCTAATGACTTTACGCTCCCTACTAGATCATTTCAACAATCACAGGTTCCTATTGTTCCTAGCACTAACAGGAATCATAGGCTAAATAGGGGAAGGATGAATGGGCATACGAATACAGTGGGAAAAGCTCACACTGGTGTATATATCCCGCAACTGCAACAATATTATCAGATGATGGACTACCTGACAGCTTAG 1488 0.4227 MAVPATVAATKASLYVGDLHPDVTETQLFLAFQEFESLSSVRVCRDSMTKTSLRYGYVNFMSQQDAIRAIKVKNNSYLFGKVMRVMWSHRDPNARKSGRGNVFVKNLAESIDNAVLHDLFQKYGNVLSSKVVVYDDGKSKGYGFVQFESEESANSAIENLNGSTVRDKQIYVGKFVRKGDRIVPGNDSKYTNLYIKNLDLDITEALLQEKFSPFGKIISLAIAKDDNGLSKGFAFVNYDRPDDARKAMEAMNGSQFGSKNLYVARAQKKAEREQILHNQFEEKRKEQILKSKGSNLYLKNIDDTVSEKELRVLFSSCGRITSVKVMRNEKGISKGFGFVCFSNPEEANKAVSTFYGCMFHGKPLYIAFAQRKEDRKTQLKLHYAPQQARLNGSSAAVVPGGFSSFFYPNVTSHMLQSGLLYQPLGLGPGWRANDFTLPTRSFQQSQVPIVPSTNRNHRLNRGRMNGHTNTVGKAHTGVYIPQLQQYYQMMDYLTA* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0743 495 Gene3D - 101 179 IPR012677 -
Vra8g0743 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Vra8g0743 495 SUPERFAMILY RNA-binding domain, RBD 290 382 IPR035979 GO:0003676
Vra8g0743 495 SUPERFAMILY RNA-binding domain, RBD 13 179 IPR035979 GO:0003676
Vra8g0743 495 SMART rrm2_1 101 173 IPR003954 GO:0003676
Vra8g0743 495 SMART rrm2_1 295 367 IPR003954 GO:0003676
Vra8g0743 495 SMART rrm2_1 192 264 IPR003954 GO:0003676
Vra8g0743 495 Coils Coil 263 283 - -
Vra8g0743 495 Gene3D - 180 274 IPR012677 -
Vra8g0743 495 SUPERFAMILY RNA-binding domain, RBD 181 275 IPR035979 GO:0003676
Vra8g0743 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Vra8g0743 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 83 IPR000504 GO:0003723
Vra8g0743 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Vra8g0743 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 261 IPR000504 GO:0003723
Vra8g0743 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Vra8g0743 495 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 12 402 IPR006515 GO:0003723
Vra8g0743 495 CDD RRM4_I_PABPs 293 371 - -
Vra8g0743 495 Gene3D - 4 100 IPR012677 -
Vra8g0743 495 SMART rrm1_1 192 264 IPR000504 GO:0003723
Vra8g0743 495 SMART rrm1_1 295 367 IPR000504 GO:0003723
Vra8g0743 495 SMART rrm1_1 13 86 IPR000504 GO:0003723
Vra8g0743 495 SMART rrm1_1 101 173 IPR000504 GO:0003723
Vra8g0743 495 CDD RRM2_I_PABPs 98 174 IPR045305 -
Vra8g0743 495 Gene3D - 275 380 IPR012677 -
Vra8g0743 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Vra8g0743 495 PANTHER RNA BINDING PROTEIN 5 489 - -
Vra8g0743 495 CDD RRM1_I_PABPs 13 92 - -
Vra8g0743 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Vra8g0743 495 PANTHER POLYADENYLATE-BINDING PROTEIN 5 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0743 Vra-Chr8 13923967 13928332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0743 12 490 Eukaryotic Initiation Factors Gene Family AT2G36660 54.620 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0743 K13126 - gmx:100798828 748.043