Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0733 ATGGGGGACAAGCACCATCTCGACGACAGCAGCGATTTCACCTCCGAGGACGAAGGCACCGAGGATTACCGCCGCGGTGGCTACCACGCTATCCGAATCGGCGACACCTTCAACGCTGGTCGCTACGTCGTTCAGTCTAAGCTCGGTTGGGGCCATTTCTCCACTGTCTGGCTCGCTTGGGACATCAAACATTCTAGGTATGTGGCTTTGAAGGTTCAGAAGAGTGCTCAGCACTACACCGAGGCGGCCATGGATGAGATAACGATTTTGCAACAGATTGCGGAGGGAGACCCTGACGATAAGAAATGTGTGGTGAAGCTTTTGGATCATTTCAAGCATTCTGGTCCCAATGGGCAGCATGTCTGCATGGTGTTTGAGTACCTTGGGGACAATCTTTTGACGCTTATTAAGTACTCTGATTACCGTGGGTTGCCTATCGCCATGGTTAAGGAAATTTGCTTTCATATTCTGGTTGGATTGGATTACTTGCACAAACAGCTTTCCATCATACATACTGACTTGAAGCCTGAAAACATTCTGCTTTTGTCGATGATTGATCCATCTAAGGATCCTAGGAAGTCTGGGGCGCAGCTTATTCTTCCTAATAGTAAGGACAAGATGGTGCTAGAGTCGTCAGGTGTGAAAGATACGAAGATGTTGAATGGGGATTTGGTTATGAATCACAAGAAGAAGATTAAGAGAAAAGCTAAACAAGCAGCCCATGGTTGTTTTGAGAAGGAAGTTTCTGAAGGAGTTGAGGGTAATCCTGAAACTTCTGGGGCTGTGGAGTCGTCTCCTAATGCGAGTTCTACAAGGGCTACCAGTTCTGCAGGAACTAGTAGGTTATCGGATGCTGATGGAACAAAGTTGAAAGAGCAGGGTAACAAAAGAGGAAGTCGATCAATGAGACAGAAGCTGCTGGCATCAGTTGATCTCAAGTGCAAGTTAGTGGACTTTGGTAATGCCTGCTGGACATATAAACAGTTTACTAATGATATCCAGACAAGACAGTATCGGTGCCCAGAGGTGATTCTTGGGTCAAAATATTCTACGTCTGCCGATCTTTGGTCCTTTGCTTGCATTTGTTTTGAACTTGCAACTGGAGATGTGTTATTTGATCCTCACAGTGGTGACAACTTTGATAGGGACGAGGACCACTTAGCATTAATGATGGAACTTCTTGGAACGATGCCACGTAAGATAGCACTAGGGGGGCGTTATTCCCGTGATTTCTTTAATAGATATGGTGATTTAAGGCACATCCGGCGATTGCGATTCTGGCCCTTGAATAAAGTCCTCATGGAGAAGTACGATTTCAGTGAGAAAGATGCAAATGATTTGACGGACTTTTTGGTTCCTATTCTTAATTTTGTTCCCGAAAAGCGGCCTACAGCTGGTCAGTGTCTTCTGCATCCTTGGATCAATGGAGCTCCACGTCTTTTGGAGCCATCCGTGTCTTCTAATCACAACCCAGCTGCTGAAACTGCTGTTTTGGATCAGAAGAAAAGGGAAAAAGATGAGAGGGAGGCCATGGAGGCAGGAATGGGAAATATTGTTATCAATTCAGATTCTAAATCACTGATGCAATCACCATCAAAGAAAGCTTTCCAATCCACCCAGCAGTAG 1626 0.4557 MGDKHHLDDSSDFTSEDEGTEDYRRGGYHAIRIGDTFNAGRYVVQSKLGWGHFSTVWLAWDIKHSRYVALKVQKSAQHYTEAAMDEITILQQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYRGLPIAMVKEICFHILVGLDYLHKQLSIIHTDLKPENILLLSMIDPSKDPRKSGAQLILPNSKDKMVLESSGVKDTKMLNGDLVMNHKKKIKRKAKQAAHGCFEKEVSEGVEGNPETSGAVESSPNASSTRATSSAGTSRLSDADGTKLKEQGNKRGSRSMRQKLLASVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGTMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLMEKYDFSEKDANDLTDFLVPILNFVPEKRPTAGQCLLHPWINGAPRLLEPSVSSNHNPAAETAVLDQKKREKDEREAMEAGMGNIVINSDSKSLMQSPSKKAFQSTQQ* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0733 541 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Vra8g0733 541 SUPERFAMILY Protein kinase-like (PK-like) 36 486 IPR011009 -
Vra8g0733 541 Gene3D Phosphorylase Kinase; domain 1 18 124 - -
Vra8g0733 541 MobiDBLite consensus disorder prediction 258 283 - -
Vra8g0733 541 MobiDBLite consensus disorder prediction 285 299 - -
Vra8g0733 541 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 539 - -
Vra8g0733 541 ProSiteProfiles Protein kinase domain profile. 42 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0733 541 Gene3D Transferase(Phosphotransferase) domain 1 125 475 - -
Vra8g0733 541 MobiDBLite consensus disorder prediction 519 541 - -
Vra8g0733 541 MobiDBLite consensus disorder prediction 484 541 - -
Vra8g0733 541 SMART serkin_6 42 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0733 541 PANTHER SERINE KINASE-LIKE PROTEIN 9 539 - -
Vra8g0733 541 ProSitePatterns Protein kinases ATP-binding region signature. 48 71 IPR017441 GO:0005524
Vra8g0733 541 CDD STKc_SRPK 31 474 - -
Vra8g0733 541 MobiDBLite consensus disorder prediction 1 21 - -
Vra8g0733 541 MobiDBLite consensus disorder prediction 247 302 - -
Vra8g0733 541 MobiDBLite consensus disorder prediction 496 512 - -
Vra8g0733 541 Pfam Protein kinase domain 307 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0733 541 Pfam Protein kinase domain 42 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0733 Vra-Chr8 13606316 13619333 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0733 7 525 EF-hand Containing Proteins AT5G22840 70.038 0.0 746
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Vra8g0733 Pkinase 5.2e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0733 K08832 - gmx:100803070 1000.73