Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0729 ATGGAGTGGAATGGGAGCACAAGACGTTATGTTCCTCGACCAGACTCTTCCTTCGGCTTCCTTTACAACTACAACTACACACCATACCCAGGAATTGAAGTGAAGCAACAAAGTATAGCAGAGTCAAGTTCATCCATGGAAAAAATGAACTGCGGGAACCAGGACAAGAAGAAGAGATTAACGACTGACCAGTTGGACTCCTTGGAGAGTAGTTTTCAGAAGGAGATAAAGCTAGACCCTGATAGGAAGATGAAGCTTTCCAAAGAGTTAGGGCTTCAACCTCGCCAAATTGCTGTTTGGTTCCAAAATAGGCGTGCAAGGTGGAAGAACAAGCAACTCGAACACTTGTACGATTCACTTAAACAGGAATTTGATGTCATATCCAAGGAGAAACAGAAGCTAGAGGAAGAGGTAATGAAGTTGAAGGGTATGCTGAGAGAGCAAGCTTCTAGAACACAAGTGTCAACAGGTTACACAGAAATCTCTGGAGAAGAAACAGTAGAAAGCACGTCAGAGGCTCTGCGTTGCTCCAAACGGAGAACACTGCAGCAGCAGCAGCAGCAGCATCATCATCATCAGAATATTGGAGAAGGAAACTGTTCTTTCACTTTGGAAGATTACAACACAGTTCCAGTACTACCCTACTGGCCTGGGGTCCCTTACTATCCCTAA 672 0.4464 MEWNGSTRRYVPRPDSSFGFLYNYNYTPYPGIEVKQQSIAESSSSMEKMNCGNQDKKKRLTTDQLDSLESSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKNKQLEHLYDSLKQEFDVISKEKQKLEEEVMKLKGMLREQASRTQVSTGYTEISGEETVESTSEALRCSKRRTLQQQQQQHHHHQNIGEGNCSFTLEDYNTVPVLPYWPGVPYYP* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0729 223 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 214 - -
Vra8g0729 223 Coils Coil 103 151 - -
Vra8g0729 223 SUPERFAMILY Homeodomain-like 41 113 IPR009057 -
Vra8g0729 223 MobiDBLite consensus disorder prediction 40 64 - -
Vra8g0729 223 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 214 IPR045224 GO:0003700
Vra8g0729 223 CDD homeodomain 56 112 IPR001356 GO:0003677
Vra8g0729 223 MobiDBLite consensus disorder prediction 179 198 - -
Vra8g0729 223 Gene3D - 47 116 - -
Vra8g0729 223 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677
Vra8g0729 223 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677
Vra8g0729 223 Pfam Homeobox associated leucine zipper 111 145 IPR003106 GO:0006355|GO:0043565
Vra8g0729 223 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Vra8g0729 223 SMART HOX_1 54 115 IPR001356 GO:0003677
Vra8g0729 223 Pfam Homeodomain 56 110 IPR001356 GO:0003677
Vra8g0729 223 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0729 Vra-Chr8 13540127 13542643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0729 1 141 Homeobox Transcription Factor Family AT5G03790 52.469 7.26e-45 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra8g0729 Homeodomain 5.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0729 - - gmx:100778007 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0729 8 13540127 13542643 Vra8g0729 8 13540127 13542643 ECH