Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0725 ATGGCCTCTTGCGACGACGACGACGACTTCTCTCTCCTCCGTGACGATAACCACCACCTCCACCAGCCTTACGCCCCGCACCACTTCTCTCCCTCCACCGTCGCCGTCGCCGTCGCTCCTGTCCCACCCAAATCCATTGCTGACGATGCCGACGACTATGGAAACCCCTTCGACGATGACGGTGGCAGCGAAAAGCGGAAGGACCGGGAGGAGATCGGCGAGGGAGCCACGTCCTACGGATTCAACAAGAGATCTAAGGCTCCACAGTCGAGTGCAGGCAGCGCGGAGTACAGAAAGGACAGAGAGGAATGGAGCGACACGGCCATCGTGTGCCTCCTCGAGGCTTACACGGAGAAGTTCACACAACTGAATCGGGGAAACCTGAGAGGAAGGGATTGGGAGGAGGTCGCGTTTGTGGTGAGCGAACGGTGCGAGAACCAATCGAAGAGCGTGGAACAGTGTAAGAACAAGGTAGATAACCTAAAAAAGAGGTACAAATTGGAGCGACAAAGAATGAGCAGTGGCTGCATTTCTACCAGTCACTGGCCTTGGTTCAAACAATTGGAGCAGATCGTTGGGAATTCTCTTCCGGCAAAATTCTCTGATGAGGATAAAGCGGTTGTTTCTGCCGGAACTTCGCCCAGACAATCGAAAAGATATGGAGCGGCAACACCCAGCACAGGTCAAGCGAATAGCATTAGGTCAAAAGCACTGACAAACCTTAGATGGCGGAGGGTTGTCTTCAAAATTAGTGGAGCAGCTCTTACTGGATCTGATACCTGCAACATGGACCCTAAGGTGGCTATGTTAGTTTCAAGAGAAGTTGCCATAGCTTCCCGCCTTGGTGTTGAGGTGGCTATTGTTGTTGGAGGCTGTAATTTCTTCTCTGGAGATGCATGGGTAAATGCGACAGGTCTAGAAAGATGTACTGCATACCAAGTTGGCATGATGGCAACAGTGATGAATTCAATATTGCTCCAATCGACTCTAGAGAAGATGGGTGTTCAGACTCGTGTACAAACTTCAATTGCCATGCAGGAGTTTGCTGAACTATACAATAGGCAGCGGGCTATCAGACATCTTGAGAAAGGAAGAGTTATTATATTTGGTGGCATCTGTTTTGGTGCTGGCAATCCACTTTTCTCAACTGACATAGCTGCAGCTCTTCGTGCTTCAGAGCTTAATGCTGAAGCAGTCCTCAAGGGTACTAATGTAGACGGTGTGTATGACTGCAACTCACGAGATAACAATTTCACTTTTGAGCACATATCCTTCAGAGAGCTGGGCTCAAGAGGAATCACTTCTATGGATGCGTCAGCGCTGACTTTATGCAAGGAAAATGCCATTCCTGTCGTGGTTTTTAATTTACTGGAGCCTGGGAACATCTCTAAAGCTTTATGTGGAGAACAAGTTGGCACACTAATTGATCAAACTGGAGCAGTAAGCTAA 1449 0.4914 MASCDDDDDFSLLRDDNHHLHQPYAPHHFSPSTVAVAVAPVPPKSIADDADDYGNPFDDDGGSEKRKDREEIGEGATSYGFNKRSKAPQSSAGSAEYRKDREEWSDTAIVCLLEAYTEKFTQLNRGNLRGRDWEEVAFVVSERCENQSKSVEQCKNKVDNLKKRYKLERQRMSSGCISTSHWPWFKQLEQIVGNSLPAKFSDEDKAVVSAGTSPRQSKRYGAATPSTGQANSIRSKALTNLRWRRVVFKISGAALTGSDTCNMDPKVAMLVSREVAIASRLGVEVAIVVGGCNFFSGDAWVNATGLERCTAYQVGMMATVMNSILLQSTLEKMGVQTRVQTSIAMQEFAELYNRQRAIRHLEKGRVIIFGGICFGAGNPLFSTDIAAALRASELNAEAVLKGTNVDGVYDCNSRDNNFTFEHISFRELGSRGITSMDASALTLCKENAIPVVVFNLLEPGNISKALCGEQVGTLIDQTGAVS* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0725 482 PANTHER URIDYLATE KINASE 61 481 - -
Vra8g0725 482 Gene3D - 234 481 IPR036393 -
Vra8g0725 482 SUPERFAMILY Carbamate kinase-like 242 475 IPR036393 -
Vra8g0725 482 MobiDBLite consensus disorder prediction 58 74 - -
Vra8g0725 482 Pfam Myb/SANT-like DNA-binding domain 101 191 IPR044822 -
Vra8g0725 482 Gene3D - 104 167 - -
Vra8g0725 482 MobiDBLite consensus disorder prediction 40 99 - -
Vra8g0725 482 Hamap Uridylate kinase [pyrH]. 241 476 IPR015963 GO:0005737|GO:0006221|GO:0033862
Vra8g0725 482 PANTHER ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN 61 481 IPR011817 GO:0006221|GO:0009041
Vra8g0725 482 Coils Coil 144 171 - -
Vra8g0725 482 CDD AAK_UMPK-PyrH-Ec 244 476 IPR015963 GO:0005737|GO:0006221|GO:0033862
Vra8g0725 482 Pfam Amino acid kinase family 245 455 IPR001048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0725 Vra-Chr8 13450127 13454604 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0725 104 195 Trihelix Transcription Factor Family AT3G14180 38.298 4.01e-16 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vra8g0725 AA_kinase 8.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0725 - - gmx:100805176 828.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0725 8 13450127 13454604 Vra8g0725 8 13450127 13454604 ECH