Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0724 ATGATCATCATGAGCAAGCATCGCCATCTCTTCTTCCTCCTCTTTTTATTTTTCTTACCATTTTTCACCTTCAGTCTCCACCACAACGATACTCATGCACTCACCCTCTTCCGCCGCCAAACCGACCTTCACGGCTACCTTCTTTCCAACTGGACCGGCGGAGATGCCTGCGCCGCTGCGTGGCGCGGCGTCCTCTGCTCCCCGAACGGCCGCGTTACCGCCCTCTCCCTACCTTCCCTCAACCTCCGTGGCCCCCTCCACCCTCTCACTCCCCTCACCCACCTACGCCTCCTTGACCTCCACGACAATCGCTTGAACGGCACCGTTTCGCCGCTCCTCTCCAACTGCACCAACATCCAACTGCTCTACCTCGCCGGCAACGACTTCTCCGGCGAGATCCAGCCGGAGATATCCTCCCTCAAATCCCTTCTCCGCCTCGACCTCTCCGACAACAACATTCACGGCAAGGTTGACTTCCTCTCCAACTTAACTCAACTCATAACATTGAGACTCCAGAACAACCTTCTCTCCGGTGAAATCCCTGACCTATCTGCCTCCATGCAAAACCTCAAAGAAGTCAACCTGACAAACAACGCCTTCTACGGTCGTTTACCAAACCCCATGCTGAAGAAATTCGGTGTCACGGCCTTCTCAGGTAACGAGGGTTTATGTGGTGCAACACCGTTACCTGTGTGTTCCTTCACCACAAACCCTCCTAATGATAATGAGAATAACAATGAAAATGAACCGTCCCAGACAGTTCCTTCAAACCCTAGTTCCTTCCCAGAAACCAGCATAATAGCTCGACCGGGGAAGGAGCGTCATAAGGGTTTAAGTCCCGGTGCCATTGTAGCAATTGTTGTGGGGAATTGTGTGGCGTTGCTTGTGATGACATCATTTCTCGTGGCACATTGTTGCGCGAGGGGAAGAGGGTCTAGTTTGGTGGGGAGTGGGGAGAGTTATGGGAAGAGGAAGAGTGGGAGCAGTTACAATGGGAGTGAGAAGAAGGTGTATGGGAGTGGGGGTGGTGAGAGTGATGGGACTACAGGGACTGATAGGAGTAGGCTTGTGTTTTTTGATCGGAGGAGTGAGTTTGAGTTGGAGGATTTGCTGCGAGCCTCGGCAGAGATGCTTGGGAAGGGTAGTTTAGGGACGGTTTATAGGGCGGTGCTTGATGATGGGTGCACCGTGGCGGTGAAGAGGCTGAAGGATGCCAACCCTTGCGCCAGGCATGAGTTTGAGCAGTATATGGATGTGATTGGGAAGCTTAAGCACCCTAATGTTGTGAGACTCAAAGCCTATTACTATGCCAAAGAGGAAAAGCTTCTTGTCTATGACTATCTCTCCAATGGAAGCTTGCATGCTCTTCTTCATGGGAACCGTGGTCCGGGGAGGATTCCATTGGATTGGACTACTAGAATAAGCCTGGTGTTGGGAGCAGCAAGAGGTCTTGCGAAGATCCACGCAGAGTACAGTGCAGCCAAAGTGCCTCACGGGAACGTGAAATCTTCGAACGTGCTTCTGGACAAGAACGGCGTCGCCTGCATCTCGGACTTCGGGCTATCACTCCTCTTGAACCCGGTTCACGCCATTGCACGACTGGGAGGGTACAGGGCACCCGAACAGGAACAGCACAAGAGGTTGTCTCAGCAAGCTGACGTGTACAGCTTCGGGGTGTTGCTGTTGGAAGTTCTCACAGGAAGAGCTCCTTCCTCGCAGTACCCTTCACCGGGTCGTCCCAGAATGGAGGAAGAGGAACAGGCCGTGGTGGACCTTCCCAAATGGGTTCGCTCCGTCGTGAAGGAAGAGTGGACCGCAGAGGTGTTTGACCAGGAGCTTTTGCGCTACAAGAACATCGAGGAAGAGCTTGTGTCCATGCTGCATGTGGGTTTGGCCTGTGTTGTGGCGCAGCCGGAGAAGAGGCCAACTATGGAAGAAGTTGTGAAAATGGTTGAGGAGATCAGGGTGGAGCAATCGCCACTTGGGGAGGACTATGATGAATCGCGCAATTCGCTTTCACCTTCCATTCCCACCACTGAAGATGGTCTACCTTAG 2055 0.5304 MIIMSKHRHLFFLLFLFFLPFFTFSLHHNDTHALTLFRRQTDLHGYLLSNWTGGDACAAAWRGVLCSPNGRVTALSLPSLNLRGPLHPLTPLTHLRLLDLHDNRLNGTVSPLLSNCTNIQLLYLAGNDFSGEIQPEISSLKSLLRLDLSDNNIHGKVDFLSNLTQLITLRLQNNLLSGEIPDLSASMQNLKEVNLTNNAFYGRLPNPMLKKFGVTAFSGNEGLCGATPLPVCSFTTNPPNDNENNNENEPSQTVPSNPSSFPETSIIARPGKERHKGLSPGAIVAIVVGNCVALLVMTSFLVAHCCARGRGSSLVGSGESYGKRKSGSSYNGSEKKVYGSGGGESDGTTGTDRSRLVFFDRRSEFELEDLLRASAEMLGKGSLGTVYRAVLDDGCTVAVKRLKDANPCARHEFEQYMDVIGKLKHPNVVRLKAYYYAKEEKLLVYDYLSNGSLHALLHGNRGPGRIPLDWTTRISLVLGAARGLAKIHAEYSAAKVPHGNVKSSNVLLDKNGVACISDFGLSLLLNPVHAIARLGGYRAPEQEQHKRLSQQADVYSFGVLLLEVLTGRAPSSQYPSPGRPRMEEEEQAVVDLPKWVRSVVKEEWTAEVFDQELLRYKNIEEELVSMLHVGLACVVAQPEKRPTMEEVVKMVEEIRVEQSPLGEDYDESRNSLSPSIPTTEDGLP* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0724 684 Pfam Protein kinase domain 376 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0724 684 Gene3D Phosphorylase Kinase; domain 1 348 447 - -
Vra8g0724 684 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 13 675 - -
Vra8g0724 684 Gene3D Transferase(Phosphotransferase) domain 1 448 672 - -
Vra8g0724 684 ProSiteProfiles Leucine-rich repeat profile. 142 164 IPR001611 GO:0005515
Vra8g0724 684 SUPERFAMILY Protein kinase-like (PK-like) 376 652 IPR011009 -
Vra8g0724 684 Gene3D Ribonuclease Inhibitor 98 233 IPR032675 -
Vra8g0724 684 ProSiteProfiles Protein kinase domain profile. 372 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0724 684 MobiDBLite consensus disorder prediction 313 349 - -
Vra8g0724 684 MobiDBLite consensus disorder prediction 658 684 - -
Vra8g0724 684 MobiDBLite consensus disorder prediction 235 264 - -
Vra8g0724 684 Gene3D Ribonuclease Inhibitor 23 91 IPR032675 -
Vra8g0724 684 SUPERFAMILY L domain-like 27 208 - -
Vra8g0724 684 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Vra8g0724 684 PANTHER LRR RECEPTOR-LIKE KINASE 13 675 - -
Vra8g0724 684 MobiDBLite consensus disorder prediction 235 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0724 Vra-Chr8 13446951 13449493 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0724 23 680 Receptor kinase-like Gene Family AT2G36570 67.407 0.0 872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra8g0724 Pkinase 8.1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0724 - - gmx:100804135 1152.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0724 8 13446951 13449493 Vra8g0724 8 13446951 13449493 ECH