Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0717 ATGGAAGCAGCACTCAGCAACACCACCATTTCTGCTGGGTCAGCTCCACCACCATCTGGGGTGTCTCAGCCAATGAACATGAATGTTAACATGAACATGAACGTCGGAAACGGCGAAGGAACAACAACACCAGCATCTGCTCCAGCACCAGCGTCAACACCAACGACGATGGTTCCTGCAGTGCCAGCTGCAACCACGACGACAACATTGGTAACAACAACGCCAGGGAGCACTGGGAGTCAAGGGAGTTTTGACTTGTTTGGGAAGAAGAAGAGAGGGAGGCCGAGAAAGTATGATGCAGATGGGAACCTGAGGGTGAGTGCAACCCCGACACCACCTCCACCGGGTTTCACTTTGTCCACACCTTCTGAGTTCTCTAACAAAAGGAGCCGTGGCAAACACACAGCTTTTGGCAACTACCAACTCTTTTCTTCTTTTGGTGAGGTGTTTGCAAACACGGCTGCTGGTGATTTCATACCGCATGTGGTGACTGTTTACACTGGAGAGGATGTTGCTGGAAAGATCTTGTCATTTGCTCAGAAGGGTCCAAGAGGAATCTGTATTCTCTCTGCCAATGGAGCTATCTCAAATGTCACCATACGCCAACCCGGCTCTTCTGGTGGCATATTGACTTACGAGGGTCGATTTGAGATTTTATCTTTGTCTGGATCATTCACTGTTGCTGACAACAGTGGCATGAAAAGTCGAACTGGTGGATTAAGTGTCTCGCTTGCTGGCCCTGATGGTCGAGTGATAGGAGGTGGTGTTGCTGGACTTTTAACAGCTGCTGGTCCCATCCAAATTGTAGTAGGAAGCTTCACGCAAAATGCACAGAAGAGCCAAAAGAAGAAGTATCAACGTGAACAACAGGCAGTGGTGTCCCCTACTTCAGCTGTTCCAGAAACTGTGACATTTGCTAGACCTATCTCACAAGCAAATGCTGAAGGTGAAAACTTTTTGATGCCCATGTCTCAGATACCAGATCAAACCCAGAGAGAATCTGTCAGTGTTTCAAGTGACAAACAAAACCTAGATGCTACACTTGATGCTGCTAATTGGAATGGTTCTGAGGAATATTCAGACCAGAGGACATCCCCAGACATCAACATATCTTTGCCGGATGAATAG 1128 0.4778 MEAALSNTTISAGSAPPPSGVSQPMNMNVNMNMNVGNGEGTTTPASAPAPASTPTTMVPAVPAATTTTTLVTTTPGSTGSQGSFDLFGKKKRGRPRKYDADGNLRVSATPTPPPPGFTLSTPSEFSNKRSRGKHTAFGNYQLFSSFGEVFANTAAGDFIPHVVTVYTGEDVAGKILSFAQKGPRGICILSANGAISNVTIRQPGSSGGILTYEGRFEILSLSGSFTVADNSGMKSRTGGLSVSLAGPDGRVIGGGVAGLLTAAGPIQIVVGSFTQNAQKSQKKKYQREQQAVVSPTSAVPETVTFARPISQANAEGENFLMPMSQIPDQTQRESVSVSSDKQNLDATLDAANWNGSEEYSDQRTSPDINISLPDE* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0717 375 SUPERFAMILY AF0104/ALDC/Ptd012-like 157 279 - -
Vra8g0717 375 Pfam Plants and Prokaryotes Conserved (PCC) domain 160 274 IPR005175 -
Vra8g0717 375 MobiDBLite consensus disorder prediction 324 369 - -
Vra8g0717 375 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 34 374 IPR039605 GO:0003680
Vra8g0717 375 CDD DUF296 160 273 IPR005175 -
Vra8g0717 375 MobiDBLite consensus disorder prediction 324 375 - -
Vra8g0717 375 MobiDBLite consensus disorder prediction 70 130 - -
Vra8g0717 375 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 34 374 - -
Vra8g0717 375 MobiDBLite consensus disorder prediction 35 54 - -
Vra8g0717 375 MobiDBLite consensus disorder prediction 87 101 - -
Vra8g0717 375 ProSiteProfiles PPC domain profile profile. 155 296 IPR005175 -
Vra8g0717 375 MobiDBLite consensus disorder prediction 1 27 - -
Vra8g0717 375 Gene3D - 160 293 - -
Vra8g0717 375 MobiDBLite consensus disorder prediction 70 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0717 Vra-Chr8 13328194 13332386 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0717 89 343 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 47.955 1.54e-69 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0717 - - gmx:100779227 513.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0717 8 13328194 13332386 Vra8g0717 8 13328194 13332386 ECH