Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0682 ATGGCGGAAGAACACCGATGCGAGACTCCGGAAGGTCACCGTCTCTGCGCCAACAACTGCGGCTTCTTCGGTAGCTCCGCTACCATGAACCTCTGCTCCAAATGCTACGGCGCGATCCGTTTGAAGGAGCAGGACGACGTGTCGACCAAATCCACGATCGAAACCGCGCTCTCTTCCTCCGCGAAGACGCCGCTGTCCACGGCTCCCCCGGCGGCGATTGATGTCCTTCTCCAAGCATCGTCTCCGCTTCCGGCAGAAGCTGCAGTCGAGGTTCCGGCTCAGGTCACGGTTCCGGTTCAGATCGCGGTGGTGACGAGTTCTACATCCTCGGGTTCATCGCAACCGAACCGGTGCGCCGCGTGTCGGAAGCGTGTGGGGTTGACTGGGTTCAAGTGCAGATGCGGAGTCACGTTTTGCGGGACCCACAGGTATCCGGAGAAGCACGCGTGCGGGTTCGACTTTAAGACGGTGGGGCGAGAGGAGATTGCTCGGGCAAACCCCGTGATCAAAGCAGAGAAGCTGCGGAGGATATGA 534 0.603 MAEEHRCETPEGHRLCANNCGFFGSSATMNLCSKCYGAIRLKEQDDVSTKSTIETALSSSAKTPLSTAPPAAIDVLLQASSPLPAEAAVEVPAQVTVPVQIAVVTSSTSSGSSQPNRCAACRKRVGLTGFKCRCGVTFCGTHRYPEKHACGFDFKTVGREEIARANPVIKAEKLRRI* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0682 177 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Vra8g0682 177 SUPERFAMILY AN1-like Zinc finger 108 172 IPR035896 -
Vra8g0682 177 Gene3D - 96 173 IPR035896 -
Vra8g0682 177 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 177 - -
Vra8g0682 177 Pfam A20-like zinc finger 14 36 IPR002653 GO:0003677|GO:0008270
Vra8g0682 177 ProSiteProfiles Zinc finger AN1-type profile. 112 158 IPR000058 GO:0008270
Vra8g0682 177 Gene3D - 1 64 - -
Vra8g0682 177 PANTHER BNAC06G14100D PROTEIN 1 177 - -
Vra8g0682 177 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 57 - -
Vra8g0682 177 SMART AN1_Zf_4 118 155 IPR000058 GO:0008270
Vra8g0682 177 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Vra8g0682 177 Pfam AN1-like Zinc finger 118 154 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0682 Vra-Chr8 11998997 12000468 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0682 1 177 C2H2 Transcription Factor Family AT3G52800 53.333 1.92e-55 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0682 - - gmx:100813749 270.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0682 8 11998997 12000468 Vra8g0682 8 11998997 12000468 ECH
Vra3g0533 3 6008261 6009538 Vra8g0682 8 11998997 12000468 PCT