Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0679 ATGATGATTGCAGAGAGAAAGAGGAAGAATCAATATAGGGGAATTCGTCAACGTCCTTGGGGGAAATGGGCAGCTGAAATCAGGGACCCAAGAAAGGGCGTTCGTGTCTGGCTTGGAACCTTCAACACTGCTGAAGAAGCAACAAAAGCTTATGATGCTGATGCACGGAGGATTCGTGGCAATAAAGCCAAGGTGAATTTCCCTGAAGAAGCTTCCGTGAAACGTTCCAAGTTAAATCCACTGGGAAATCGGAAGATTGTTCAACCCAATGTTCACAAGTTCAATGCTGGGAACAATCAGAACGACCTTCATTGGCCTATGGATCTGGTGGAACAGAAACCCCTAGTTAATCAGTTTGCTGACATGGGTTCCTTCCCCGACAGTGGAAATGGGCTCAGATCTCTACCTTCGACTGATAATGTGACCCTTCGCAATAACGATTCGCCCTGTGCTGCAGTGGTCACAAGCATGAAACCTAATCCCAATTGCCAGAAAATCCCAATCAAAATCGCAGATTTTACCCAAATTTGCATCTGA 537 0.4581 MMIAERKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEATKAYDADARRIRGNKAKVNFPEEASVKRSKLNPLGNRKIVQPNVHKFNAGNNQNDLHWPMDLVEQKPLVNQFADMGSFPDSGNGLRSLPSTDNVTLRNNDSPCAAVVTSMKPNPNCQKIPIKIADFTQICI* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0679 178 Pfam AP2 domain 11 60 IPR001471 GO:0003700|GO:0006355
Vra8g0679 178 CDD AP2 11 69 IPR001471 GO:0003700|GO:0006355
Vra8g0679 178 PANTHER DNA-BINDING DOMAIN 4 147 IPR044808 GO:0003700|GO:0009873
Vra8g0679 178 PRINTS Ethylene responsive element binding protein signature 12 23 IPR001471 GO:0003700|GO:0006355
Vra8g0679 178 PRINTS Ethylene responsive element binding protein signature 34 50 IPR001471 GO:0003700|GO:0006355
Vra8g0679 178 Gene3D AP2/ERF domain 10 70 IPR036955 GO:0003700|GO:0006355
Vra8g0679 178 SMART rav1_2 11 74 IPR001471 GO:0003700|GO:0006355
Vra8g0679 178 SUPERFAMILY DNA-binding domain 11 69 IPR016177 GO:0003677
Vra8g0679 178 ProSiteProfiles AP2/ERF domain profile. 11 68 IPR001471 GO:0003700|GO:0006355
Vra8g0679 178 PANTHER EREBP TRANSCRIPTION FACTOR 4 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0679 Vra-Chr8 11852981 11853517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0679 6 69 AP2-EREBP Transcription Factor Family AT3G16770 82.812 1.10e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra8g0679 AP2 3.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0679 K09286 - vra:106770224 371.703