Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0670 ATGGTGGTGGCGGAGTCTGAGATGAACTCACAAAACGACGCTGAATCTCCGATAGAGTTGGAGCAACAGCACGACGTCAACAAGAATCACCCATTTTCTTCACTGGGAAGAGAAGCTTCTTCCATCTACTCCATCACCCTCGACGAGTTCCAACACACGCTATGGGAGAGTGGCAAGAACTTTGGCTCCATGAACATGGACGAGTTTCTCAGCAGCATATGGTGGTGTGCAGAAGAAACTCAAATTTTAAACAACAGCAACAACAGCTTCTCACTGAGTGAAGCTTCCGCAGAAAAGGGGTTGATAAGGAAGCAACCAAGCCTTCCTCGGCAAGGGTCTCTAACACTTCCTGCACCTTTGTGTAGGAAAACAGTGGACGAGGTTTGGTCTGAGATACACAAAGGACAACAACAACGGCAACCACAGAAAAACAACGACAATAACTGTGGAAACGTTAATAATGATTACAATGCTCAAAATACCGAATCTGCCCGCCGCCAACCTACCTTTGGAGAGATGACTTTGGAGGACTTCTTGATAAAAGCTGGGATAGTTAGAGAACAGTGTGCCATTGCAACGCCAGTTCCAGCTTCTACAAGTCAAAATCAGCATTTGCAGCAGTATGGCTTCTTTCCTAATAACAACCGTACAATGGACCCTTCTTTTGTCGGAAGGCAGATGATGGGAGTTGGTGGCGGCGGTAATGCTGGTGGGAATGTGGTTAGACCATCTTATCAGGCGGTGCCTAAGGGTGGTGGTGGTCGCGGTGCAGTTGGACAGTCTTCTGGGTATCCGGCGGCAGTGCCGTCTGCGGTTTGCTTTGGACCGAGGGTGGTGAATGGTGGCGGTGGTTACGAGGCAGTGAGCAACATGGGAGTGGTGGCGCCGGTGAGCCCGGTTTCGCCGGAGGGTATAGGTACTGGTGAAAAGTTTGGTTGCCGATTTGGGATGGAGAAAGTTGTGTCAAGAGGGAGAAAGAGGGTGTTTGATGGGCCTGTGGAGAAGGTGGTGGAGAGAAGACAGAGGAGGATGATCAAGAACAGAGAATCAGCAGCCAGATCCAGAGCAAGAAAACTGGCATACACAGTTGAATTAGAAGCAGAATTGACCCAGTTGAAAGAAGAGAACGCCGAACTTAAACTATCACTGGCTGATCTTGAAAGGAGAAGAAAGCAACAGCACTCAGAGGAAGGGAATTGGAGAGTTCAAAACAACCTTGAAAATGCCAAAAACAAATCGAGATCATTGAGAAGGACAATGAGTTGCCCTTTATGA 1275 0.4831 MVVAESEMNSQNDAESPIELEQQHDVNKNHPFSSLGREASSIYSITLDEFQHTLWESGKNFGSMNMDEFLSSIWWCAEETQILNNSNNSFSLSEASAEKGLIRKQPSLPRQGSLTLPAPLCRKTVDEVWSEIHKGQQQRQPQKNNDNNCGNVNNDYNAQNTESARRQPTFGEMTLEDFLIKAGIVREQCAIATPVPASTSQNQHLQQYGFFPNNNRTMDPSFVGRQMMGVGGGGNAGGNVVRPSYQAVPKGGGGRGAVGQSSGYPAAVPSAVCFGPRVVNGGGGYEAVSNMGVVAPVSPVSPEGIGTGEKFGCRFGMEKVVSRGRKRVFDGPVEKVVERRQRRMIKNRESAARSRARKLAYTVELEAELTQLKEENAELKLSLADLERRRKQQHSEEGNWRVQNNLENAKNKSRSLRRTMSCPL* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0670 424 MobiDBLite consensus disorder prediction 398 424 - -
Vra8g0670 424 SMART brlzneu 335 399 IPR004827 GO:0003700|GO:0006355
Vra8g0670 424 Coils Coil 399 419 - -
Vra8g0670 424 PANTHER ABA RESPONSE ELEMENT-BINDING FACTOR 4 423 IPR029803 GO:0003700|GO:0005634|GO:0009737|GO:0045893
Vra8g0670 424 MobiDBLite consensus disorder prediction 132 168 - -
Vra8g0670 424 Gene3D - 337 391 - -
Vra8g0670 424 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 4 423 IPR043452 GO:0003700|GO:0045893
Vra8g0670 424 MobiDBLite consensus disorder prediction 1 23 - -
Vra8g0670 424 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 337 389 IPR004827 GO:0003700|GO:0006355
Vra8g0670 424 SUPERFAMILY Leucine zipper domain 339 389 IPR046347 GO:0003700|GO:0006355
Vra8g0670 424 CDD bZIP_plant_BZIP46 339 393 - -
Vra8g0670 424 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 342 357 IPR004827 GO:0003700|GO:0006355
Vra8g0670 424 Pfam bZIP transcription factor 339 392 IPR004827 GO:0003700|GO:0006355
Vra8g0670 424 Coils Coil 362 396 - -
Vra8g0670 424 MobiDBLite consensus disorder prediction 1 17 - -
Vra8g0670 424 MobiDBLite consensus disorder prediction 134 168 - -
Vra8g0670 424 MobiDBLite consensus disorder prediction 388 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0670 Vra-Chr8 11690917 11695588 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0670 1 393 bZIP Transcription Factor Family AT2G36270 48.090 4.19e-102 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra8g0670 bZIP_1 6.7e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0670 K14432 - gmx:100790948 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0670 8 11690917 11695588 Vra8g0670 8 11690917 11695588 ECH
Vra3g0539 3 6059100 6062822 Vra8g0670 8 11690917 11695588 PCT