Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0653 ATGGGGCATAGACATTTATATAGCTCATCTCCAATGCTTGATGGTGAACCTGACCAGAACTGGAATCATATGCATACTGATCAACAATATGTGAACCTTGGTAGGAGTACCACTTCCGACAATGGCTCTTTTATTTATCCTATGGAAAATATGTCCATAGATAGCATCTCTTTTCCATCTCATTGGAACACTGCTCCAAGGTCAAATGGGTATACCTCCACAAGTCTCAACATTGAAGCACCCTCTCATCAAACAGATATATCAGGCACTTCTAATGATCATTTTCTGCATCCATCAAGTGGTGGAATGTTTTATGCGGTGTCTGAAAATTATGTACACCAGCCTTCTAGTTCCAATTATGACAGACAATCATTTCCGGTTGCTGATGGGGGTTTTATTGATCTCGCAATGGGAAATGGGCGAGGGCCTGGGCCTCATAAGCGGAAGAGCCCTGGAGTTCCTTCAGTCTGTGAGAGAGGAAGTACAAGCAGATGTTTTAATGCTGCAAGTGCAAATGCAGCTGATCGTCCTACATCTTCAGAATTGCGGCCTGAGAAGCCCACTATGGATTCACTATATATGCCTTGGGATCATGTTAATATGACACCTGATCATGTGAATATGACACCCTCATTTAGAGGTAGAGGCCTTTCAATACGGGGTGAAAGTTCTTTAAGGAATGTGAGGAGTCGTTCTACACTTGATTTGGAGTCCAACCTGGCTAGGACCCATTTATCGAATACTCATTCACACAACTCATTCTCTACCGGTCCCCAAATGGACCATTCTACCATGGTAGATCTTTCTACTCAAACTTCTGGATCTTTGACAAGGGATTGGAGCCAAATGAGTGTGTGTCTTGCTCATGGAAGGGTGCCATCATCAGATGCAAATGCTTTTAATCACGAGGCTAATCATTTCCTTGCTGGAAATGGTTCTAGTAATGCTCCAGTAGATGTTGGAGGTTTTCATAATGAATTTGGAACTAGCAGAAATCCTACTGCTCCACAAAGTTTTCATAGTAATTGTCCGGCTCAACCTGCTAGAGGAGTTCGCAGTAACTACTCTCAAAGATCTACTCCAACTTTTAGGGCTTCTTCCAGCTTGCGCTTGGGTCGCATGGCACCTTCTGATGATGGATTGCATATGGTGGCTGAAAGTTACTCTTCTAGACATCCAAGGCCATTGACCACCATTGGCTGGCACAGCAATGATAGAAATGGAAGGTCAAGAATACATAGTGATAGATATCGAGCATTGGCTGATGAGGTTGGTCTTAATGATCAATTTAGCTTTGAGGGTTTCATGATTGTTGATCGCACTTCACTGTATGGTAGGAATATGATTGATCAACATAGAGACATGAGGATGGACATAGACAACATGAGTTATGAGGAACTCCTTGCACTCGGAGAGAGAATAGGCCATGTGAGCACAGGATTGTCTGAGGATTTGATTTCCAAGTATTTGACAGAAACGATATACTGTTCATCCGAGCCAAGTCAAGAAGAAGAAGCTTGTGCAATCTGCCTGGAAGAATATAAGAACGTGGACGATGTTGGAACGCTGAAAGCTTGTGGGCATGATTACCATGTGAGTTGCATTAGAAAATGGTTATCTATGAAGAAAGTATGTCCTATCTGCAAAGCTTCTGCTTTGCCTGAGGAAACGAAGGATAAATAA 1683 0.4266 MGHRHLYSSSPMLDGEPDQNWNHMHTDQQYVNLGRSTTSDNGSFIYPMENMSIDSISFPSHWNTAPRSNGYTSTSLNIEAPSHQTDISGTSNDHFLHPSSGGMFYAVSENYVHQPSSSNYDRQSFPVADGGFIDLAMGNGRGPGPHKRKSPGVPSVCERGSTSRCFNAASANAADRPTSSELRPEKPTMDSLYMPWDHVNMTPDHVNMTPSFRGRGLSIRGESSLRNVRSRSTLDLESNLARTHLSNTHSHNSFSTGPQMDHSTMVDLSTQTSGSLTRDWSQMSVCLAHGRVPSSDANAFNHEANHFLAGNGSSNAPVDVGGFHNEFGTSRNPTAPQSFHSNCPAQPARGVRSNYSQRSTPTFRASSSLRLGRMAPSDDGLHMVAESYSSRHPRPLTTIGWHSNDRNGRSRIHSDRYRALADEVGLNDQFSFEGFMIVDRTSLYGRNMIDQHRDMRMDIDNMSYEELLALGERIGHVSTGLSEDLISKYLTETIYCSSEPSQEEEACAICLEEYKNVDDVGTLKACGHDYHVSCIRKWLSMKKVCPICKASALPEETKDK* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0653 560 MobiDBLite consensus disorder prediction 346 366 - -
Vra8g0653 560 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 472 553 IPR013083 -
Vra8g0653 560 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 556 - -
Vra8g0653 560 SUPERFAMILY RING/U-box 497 552 - -
Vra8g0653 560 Pfam Ring finger domain 506 549 IPR001841 -
Vra8g0653 560 ProSiteProfiles Zinc finger RING-type profile. 507 549 IPR001841 -
Vra8g0653 560 MobiDBLite consensus disorder prediction 138 159 - -
Vra8g0653 560 MobiDBLite consensus disorder prediction 168 187 - -
Vra8g0653 560 SMART ring_2 507 548 IPR001841 -
Vra8g0653 560 MobiDBLite consensus disorder prediction 1 23 - -
Vra8g0653 560 CDD RING-H2_PA-TM-RING 507 549 - -
Vra8g0653 560 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 556 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0653 Vra-Chr8 11055746 11059928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0653 1 559 C3H Transcription Factor Family AT2G37150 41.579 1.32e-109 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0653 - - gmx:100786013 947.192