LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra8g0642	ATGGCTGCTGTTGCGTACGACGTTGCTGCTTTGGCTTTTAAGGGTGATGGTGCTTCCTTGAACTTCCCCGGCGCGATTTCTTCACTGCCGCGTCTCAACTCGGCTACATCCTCTGTCAGGGCGATTCAGTTTGCCGCGTCACAAGCAGCGGAGAAGCACTTTTCTTGTGCCGAGCTTCAAAAACTGGGGGACGATCTTTCTTCAGAGGGAGGTTCTGGAAGCTTCTCATGGGATGAAGATTGTTCGGAGTTGTCGTCGGAAGAAGGTTCTAGAAAGTTCTTTTGGGATGAGGAGGAGGTGTTTAACATGCCGGAGTTGTTGAACAGCATGGCGGAAGCCTTGATCATTACACCCCCTGCTTTGCAGAAAGGGTTCAATTGGGTTGGTGGGGAAACCACAGTAGATTTGACTCTGTGGTGA	420	0.5095	MAAVAYDVAALAFKGDGASLNFPGAISSLPRLNSATSSVRAIQFAASQAAEKHFSCAELQKLGDDLSSEGGSGSFSWDEDCSELSSEEGSRKFFWDEEEVFNMPELLNSMAEALIITPPALQKGFNWVGGETTVDLTLW*	140

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra8g0642	139	Gene3D	AP2/ERF domain	1	24	IPR036955	GO:0003700\|GO:0006355
	Vra8g0642	139	PANTHER	CBF/DREB1 TRANSCRIPTION FACTOR	1	139	-	-
	Vra8g0642	139	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	1	139	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra8g0642	Vra-Chr8	10592991	10593635	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra8g0642	1	119	AP2-EREBP Transcription Factor Family	AT2G36450	36.975	7.76e-14	63.5

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra8g0642	-		-	vra:106770207	261.922

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