Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0642 ATGGCTGCTGTTGCGTACGACGTTGCTGCTTTGGCTTTTAAGGGTGATGGTGCTTCCTTGAACTTCCCCGGCGCGATTTCTTCACTGCCGCGTCTCAACTCGGCTACATCCTCTGTCAGGGCGATTCAGTTTGCCGCGTCACAAGCAGCGGAGAAGCACTTTTCTTGTGCCGAGCTTCAAAAACTGGGGGACGATCTTTCTTCAGAGGGAGGTTCTGGAAGCTTCTCATGGGATGAAGATTGTTCGGAGTTGTCGTCGGAAGAAGGTTCTAGAAAGTTCTTTTGGGATGAGGAGGAGGTGTTTAACATGCCGGAGTTGTTGAACAGCATGGCGGAAGCCTTGATCATTACACCCCCTGCTTTGCAGAAAGGGTTCAATTGGGTTGGTGGGGAAACCACAGTAGATTTGACTCTGTGGTGA 420 0.5095 MAAVAYDVAALAFKGDGASLNFPGAISSLPRLNSATSSVRAIQFAASQAAEKHFSCAELQKLGDDLSSEGGSGSFSWDEDCSELSSEEGSRKFFWDEEEVFNMPELLNSMAEALIITPPALQKGFNWVGGETTVDLTLW* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0642 139 Gene3D AP2/ERF domain 1 24 IPR036955 GO:0003700|GO:0006355
Vra8g0642 139 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 1 139 - -
Vra8g0642 139 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0642 Vra-Chr8 10592991 10593635 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0642 1 119 AP2-EREBP Transcription Factor Family AT2G36450 36.975 7.76e-14 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0642 - - vra:106770207 261.922