Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0638 ATGTCGATAAACCACTACTCCATGGACCTTCCCGAAACAACACTGTGGTGGCCCCAACAACAGCATCATCAGCAGCAGCAACCCATCTTAATGGAAGCAACCCCGAATCCCTCCTCAACTTCCTGGCCCTCCGCAGACCCTCTGGGTCTCAACCTCAACCACCAAAACGACGACGCCGAAGAAGACGAAGAAGAAGAGGACCAAACAACAACCACTACACAGCAAGAGGAAACGGAAGACGAGAAGGAACCCATGTTCGAGAAGCCTCTAACTCCCAGCGACGTGGGGAAGCTCAACCGCCTCGTAATACCCAAGCAGCACGCCGAGAAGTACTTCCCTCTCAGCGGTGGCGGTGGCGGCGACTCGGCCGAGTGCAAGGGGCTTCTATTGAGTTTCGAGGACGAGTCGGGTAAGTGCTGGCGGTTTCGCTACTCCTACTGGAACAGCAGCCAGAGCTACGTGCTGACCAAAGGGTGGAGCCGCTACGTCAAAGACAAGCGCCTCGACGCCGGCGACGTTGTCTTGTTCGAGCGCCACCGCTCCGACGCCCACCGCCTCTTCATCGGATGGAGACGCCGGCGACACGGTGACACATCGCCGGTGCACGTTAGCGGCAGGGCGGTGGGGCACGGGAAGAGTGGCGACGGGAGTAGTAAGAATGAGGGTGGCGGCGGCACTGGTGTTGGTTTGGGATGGACCAGAGGGTTCTATTCTGCGCATCCTTATCCTACGCATCAGCAGCAGCAGCTGCATAATCATCAGCCCTTGCCATACCAATATGACTGTCTTCATGCAGGAAGAGGGTCGGAAGGTGAGATAGCAGAGGGAAAGAGTCGGAGTTCAAGGGTACTTAGGCTTTTTGGGGTGAACATGGAATGCCAAAGTGAACATGATTCTGGACCCTCCACACCCCAATCTTCCTACAATACTACCAACATGCCCTCCACACAGGGCACACATAACCATCACCATTTCTACCATCCTCACCAACCTTACTACTACTACTACTAG 1011 0.5569 MSINHYSMDLPETTLWWPQQQHHQQQQPILMEATPNPSSTSWPSADPLGLNLNHQNDDAEEDEEEEDQTTTTTQQEETEDEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLSGGGGGDSAECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRSDAHRLFIGWRRRRHGDTSPVHVSGRAVGHGKSGDGSSKNEGGGGTGVGLGWTRGFYSAHPYPTHQQQQLHNHQPLPYQYDCLHAGRGSEGEIAEGKSRSSRVLRLFGVNMECQSEHDSGPSTPQSSYNTTNMPSTQGTHNHHHFYHPHQPYYYYY* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0638 336 SMART B3_2 86 194 IPR003340 GO:0003677
Vra8g0638 336 Pfam B3 DNA binding domain 86 193 IPR003340 GO:0003677
Vra8g0638 336 MobiDBLite consensus disorder prediction 197 225 - -
Vra8g0638 336 MobiDBLite consensus disorder prediction 57 74 - -
Vra8g0638 336 MobiDBLite consensus disorder prediction 19 94 - -
Vra8g0638 336 MobiDBLite consensus disorder prediction 294 324 - -
Vra8g0638 336 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 28 317 IPR044800 GO:0003700
Vra8g0638 336 MobiDBLite consensus disorder prediction 295 321 - -
Vra8g0638 336 Gene3D - 74 202 IPR015300 -
Vra8g0638 336 ProSiteProfiles B3 DNA-binding domain profile. 86 194 IPR003340 GO:0003677
Vra8g0638 336 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 28 317 - -
Vra8g0638 336 CDD B3_DNA 84 184 IPR003340 GO:0003677
Vra8g0638 336 MobiDBLite consensus disorder prediction 19 51 - -
Vra8g0638 336 SUPERFAMILY DNA-binding pseudobarrel domain 81 193 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0638 Vra-Chr8 10397376 10399450 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0638 79 300 RAV Transcription Factor Family AT5G06250 51.282 1.52e-66 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vra8g0638 B3 6.3e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0638 - - aprc:113872948 429.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0638 8 10397376 10399450 Vra8g0638 8 10397376 10399450 ECH
Vra3g0576 3 6344293 6349245 Vra8g0638 8 10397376 10399450 PCT