Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0631 ATGGCTGCAACTGCTGCAGGCATAGCTTCCTTGTTTTCTTCTTCCATTAACAACATCAAATGTCTTCGTTCCAAGCACTGCTCCATGATGGATCCCCTTATGACAGCAATGCCGTCAAACCGCATGTCACACTTGGTCGAACCTTTGTCCATCGGAGGTACCATGTCGCATAGGTTGTGGTGGCCTAGAATCTCTGCTGCTGTTGCACAAGAAGAGCTGGTTGCTGCGGATGATGCTGGTTTCGTTGAAGAAGAGAATGAAGGGGAAGTGGTGGCAGAACAAGACTCAGATGAATCCTTTGCTGACACTAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCCAAACTTGCAGGGCTAATTCAGGATTATGGTAGCGCAGAACTAATTGAGGTTCTATACGACAGGGACACTGGAAAAAGTAGAGGCTTTGCATTTGTGACAATGAGTTGCATTGAAGACTGTAATACAGTGATAGAAAATCTTGACGGAAAAGAATTCATGGGCAGAACCCTGAGGGTGAACTTCTCTAACAAACCAAAGCCAAAAGAACCCTTGTACCCTGAAACTGAGCATAAACTCTTTGTCGGGAATCTGTCATGGTCAGTAACTAATGAGATTTTGACACAAGCCTTTCAAGAATATGGAACAGTGGTTGGAGCTAGGGTCTTATATGATGGAGAAACTGGAAGGTCACGTGGCTATGGATTTGTTTGCTTTTCAACAAAAGCAGAGATGGAATCTGCTCTGGAAGCCTTGAATGATGTGGAACTAGAAGGAAGGGCTATGCGTGTGAGTTTGGCTCAAGGAAAACGAGCACAAGGCTAA 834 0.4436 MAATAAGIASLFSSSINNIKCLRSKHCSMMDPLMTAMPSNRMSHLVEPLSIGGTMSHRLWWPRISAAVAQEELVAADDAGFVEEENEGEVVAEQDSDESFADTKLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNTVIENLDGKEFMGRTLRVNFSNKPKPKEPLYPETEHKLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCFSTKAEMESALEALNDVELEGRAMRVSLAQGKRAQG* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0631 277 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 181 IPR000504 GO:0003723
Vra8g0631 277 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 79 274 - -
Vra8g0631 277 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 175 IPR000504 GO:0003723
Vra8g0631 277 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 265 IPR000504 GO:0003723
Vra8g0631 277 SUPERFAMILY RNA-binding domain, RBD 99 185 IPR035979 GO:0003676
Vra8g0631 277 SUPERFAMILY RNA-binding domain, RBD 187 274 IPR035979 GO:0003676
Vra8g0631 277 Gene3D - 185 277 IPR012677 -
Vra8g0631 277 Gene3D - 66 184 IPR012677 -
Vra8g0631 277 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 272 IPR000504 GO:0003723
Vra8g0631 277 PANTHER TRANSFORMER-2-RELATED 79 274 - -
Vra8g0631 277 SMART rrm1_1 195 268 IPR000504 GO:0003723
Vra8g0631 277 SMART rrm1_1 104 177 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0631 Vra-Chr8 10234773 10237290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0631 79 273 Eukaryotic Initiation Factors Gene Family AT3G16380 31.308 4.87e-19 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0631 - - gmx:100820203 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0614 3 6725211 6729615 Vra8g0631 8 10234773 10237290 PCT