Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0630 ATGTCGCAGCAAACATGTTCTGCGGACCAACTAGCCCAATTTTTTGGCCCAAACACAACCAACGCCCAAGCGGCGGCCACGCTAATCTGCGACCAGTTCACCGCCGTGCGTAAGAATTTCACCGACACAGGCTACGCCATTGACAACACCTACCTCCTCTTCTCCGCCTACCTCGTGTTCTCCATGCAGCTTGGCTTCGCCATGCTCTGCGCCGGCTCGGTCCGCGCCAAGAACACCATGAACATCATGCTCACCAACGTGCTCGACGCCGCTGCCGGTGGTATCTTCTACTACCTCTTCGGCTTTGCCTTCGCCTTTGGCTCCCCTTCCAACGGCTTCATCGGGAAACACTACTTCGGCCTCACAGACCTCCACTCCCAGGGGTTAGACTACAGCAACTTCCTTTACCAGTGGGCCTTCGCCATCGCCGCTGCCGGCATCACCAGCGGCTCCATCGCCGAGCGAACCCAGTTTGTCGCGTACCTAATCTACTCCTCCTTCCTCACCGGCTTCGTCTATCCCGTAGTCTCTCACTGGTTCTGGTCCCCTGACGGTTGGGCATCCGCGTTCAAAAAACACAATCTTTTATTGTCCACCGGCGTAATCGACTTCGCCGGCTCCGGCGTTGTCCACATGGTAGGCGGTGTGGCAGGACTCTGGGGCGCCCTTATCGAGGGTCCACGAATCGGCCGATTTGATCACGCGGGACGCGCGGTGGCCTTACGTGGCCACAGCGCCTCGTTAGTCGTGCTTGGAACCTTCATGCTGTGGTTCGGTTGGTACGGTTTCAACCCTGGTTCATTCAACAAAATTTTAGTCGCTTATGACTCGGGGAGCCAGTATGGTCAATGGAGCGCGGTTGGGAGAACCGCGGTTACCACAACTCTAGCGGGGTCAACGGCTGCGTTGACCACGCTCTTCGGGAAACGCCTGATATCTGGTCATTGGAACGTCACCGATGTCTGCAACGGTTTGCTGGGAGGGTTCGCCGCCATCACAGCCGGTTGTTCTGTGGTGGAGCCGTGGGCGGCTATCGTGTGTGGTTTTGTGGCGTCCCTTGTTCTGATCGGGTGTAACAAACTGGCGGAAAGGGTTAGGTTTGACGATCCTTTGGAGGCGGCGCAGTTGCACGGAGGATGTGGCGCGTGGGGGGTGCTTTTCACGGCGCTGTTCGCGAAGAAGGAGTATGTGTTGGAGGTTTACGGGGGAGGGAGGAAGCACGGGTTGTTTATGGGTGGTGGATGGAATTTGTTGGGGGCGCACGTAATTCAGATTTTGGTGATTGTTGGATGGGTTAGTGCGACGATGGGGCCACTCTTCTGGGGGCTTAAAAAATTGAAGCTTTTGAGGATTTCGTCGGAGGATGAACTGGCGGGTATGGATCTGACCCGGCATGGAGGGTTTGCCTATGCCTACGAAGATGATGAGACTCAGAAGCATGGGATTCAGTTGAGGAAGGTTGAACCCAACTCCTCTACCCCAACCACTGATGGGGGATTATGA 1503 0.5635 MSQQTCSADQLAQFFGPNTTNAQAAATLICDQFTAVRKNFTDTGYAIDNTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGIFYYLFGFAFAFGSPSNGFIGKHYFGLTDLHSQGLDYSNFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSPDGWASAFKKHNLLLSTGVIDFAGSGVVHMVGGVAGLWGALIEGPRIGRFDHAGRAVALRGHSASLVVLGTFMLWFGWYGFNPGSFNKILVAYDSGSQYGQWSAVGRTAVTTTLAGSTAALTTLFGKRLISGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVASLVLIGCNKLAERVRFDDPLEAAQLHGGCGAWGVLFTALFAKKEYVLEVYGGGRKHGLFMGGGWNLLGAHVIQILVIVGWVSATMGPLFWGLKKLKLLRISSEDELAGMDLTRHGGFAYAYEDDETQKHGIQLRKVEPNSSTPTTDGGL* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0630 500 SUPERFAMILY Ammonium transporter 46 451 - -
Vra8g0630 500 Pfam Ammonium Transporter Family 51 470 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vra8g0630 500 PANTHER AMMONIUM TRANSPORTER 5 492 - -
Vra8g0630 500 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vra8g0630 500 PANTHER AMMONIUM TRANSPORTER 1 MEMBER 1 5 492 - -
Vra8g0630 500 Gene3D Ammonium transporter AmtB like domains 25 489 IPR029020 -
Vra8g0630 500 TIGRFAM amt: ammonium transporter 48 470 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0630 Vra-Chr8 10199690 10201653 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0630 4 495 Inorganic Solute Cotransporters AT4G13510 79.596 0.0 802
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0630 K03320 - gmx:100818774 857.055