Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0629 ATGCATCAAACATTAGACCTAATTGAGTGTCACAGAAAGTGTAAGAAACCATTTTTCTCCAAGAACAACCCTTACTGCATGTATTGGGGGAAAGTTTTGGGTGGCCAGATAGGTGGTGGAGGTGTGATGGAAGAGGAGGTATGGAGGAAGGGACCATGGACTGCTGAAGAAGACAGGTTGCTTGTTGAGTATGTCAGACTGCATGGTGAAGGAAGATGGAACTCTGTTTCTAGGCTTGCAGGGTTGAAAAGAAATGGGAAGAGCTGCAGATTGAGGTGGGTGAATTATCTGAGGCCTGATCTCAAGAGGGGACAGATAACACCACAAGAAGAGAGTATAATTCTGGAGTTGCATGCAAGGTGGGGAAACAGGTGGTCAACAATTGCAAGGAGTTTACCAGGGAGAACTGACAATGAGATAAAGAACTATTGGAGGACTCATTTCAAGAAAAAGGCTAAAAGTCCCTCTGATGCAGCTGAGAAGGCAAGAAATAGAGTCCTGAGGAAGCAGCAATTTCAGCAGCAGCAACAGTTGCAGCAGCAGCAACAACAGTATCAGGCACAACAACAGCTACAGTTCAACTTTGACATGAAAGGCATCATGGCCTTGCTTGAGGATAACAACACATGTAGAGCACCTTATGCAGCATCTCAATCTAGACAGGAAATGATCAACATGCAGCAAAACACCACAGAAGAGCAAGGATTCTTGTACTCCATGCTCAATGGCAACTTTTCTGCAGCAGAAACCTCACCTGAAGAAACTTTTTTGGATGGTCTGTGGAACTTGGATCATGGGAATTTCACTGTAGCTAGTGCAGCAAGCAAAGTCGGTCTATACAATTTAGTTGCTCCCTTCTGTTAA 864 0.4444 MHQTLDLIECHRKCKKPFFSKNNPYCMYWGKVLGGQIGGGGVMEEEVWRKGPWTAEEDRLLVEYVRLHGEGRWNSVSRLAGLKRNGKSCRLRWVNYLRPDLKRGQITPQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKSPSDAAEKARNRVLRKQQFQQQQQLQQQQQQYQAQQQLQFNFDMKGIMALLEDNNTCRAPYAASQSRQEMINMQQNTTEEQGFLYSMLNGNFSAAETSPEETFLDGLWNLDHGNFTVASAASKVGLYNLVAPFC* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0629 287 CDD SANT 52 97 IPR001005 -
Vra8g0629 287 Pfam Myb-like DNA-binding domain 103 147 IPR001005 -
Vra8g0629 287 Pfam Myb-like DNA-binding domain 50 97 IPR001005 -
Vra8g0629 287 ProSiteProfiles Myb-like domain profile. 98 148 IPR001005 -
Vra8g0629 287 SUPERFAMILY Homeodomain-like 49 144 IPR009057 -
Vra8g0629 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 97 IPR017930 -
Vra8g0629 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 98 152 IPR017930 -
Vra8g0629 287 PANTHER MYB TRANSCRIPTION FACTOR 31 266 - -
Vra8g0629 287 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 31 266 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vra8g0629 287 SMART sant 49 99 IPR001005 -
Vra8g0629 287 SMART sant 102 150 IPR001005 -
Vra8g0629 287 Coils Coil 168 188 - -
Vra8g0629 287 CDD SANT 107 148 IPR001005 -
Vra8g0629 287 Gene3D - 107 151 - -
Vra8g0629 287 Gene3D - 50 102 - -
Vra8g0629 287 ProSiteProfiles Myb-like domain profile. 49 97 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0629 Vra-Chr8 10114151 10115681 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0629 43 287 MYB Transcription Factor Family AT4G13480 54.682 2.26e-88 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra8g0629 Myb_DNA-binding 2.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0629 K09422 - gmx:100795981 404.445