Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0621 ATGGCTTCTCAAAATCCAGCGGAAGAAGAAAACTCAAAGCAAAATTGGTCCCTCCAAGACTTTGAGATCGGTAAACCTCTCGGCAGGGGCAAATTTGGTAGAGTTTATGTTGCCAGAGAAGTCAAGAGCAATTTTGTTGTGGCGTTGAAGATTATATTTAAGGAACAAATTGATAAGTATAAAATTCATCACCAACTAAGGAGAGAGATGGAGATACAGACCAGTCTTCGGCACCCTAATATCCTGCGTCTTTATGGTTGGTTTCATGACACTGACCGTGTTTTCTTGATTCTCGAGTATGCTCATAAAGGTGAGGTCTACAAAGAGATGAGAAAGAAGGGTCACTTTACAGAGAAACAAGCTGCTACGTATATTTTGAGCCTCACAAAGGCGTTGACTTATTGCCACGAGAAGCATGTTATTCATAGGGATATCAAGCCTGAAAATTTGTTGCTGGATCACGAGGGTCGTCTTAAAATTGGAGACTTTGGTTGGTCTGTTCAGTCTAAAAGCAAAAGACATACCATGTGTGGCACATTGGATTATTTAGCACCAGAAATGGTTGAAAATAAAGCTCATGACTATGCTGTTGATAACTGGACTCTTGGTATCCTTTGTTATGAGTTCCTCTTTGGTGCCCCTCCATTTGAGGCTGAGAGTCAAGCTGATACCTTCAAAAGGATAATGAAGGTTGACCTAAGCTTCCCTTCCAACCCTTCTGTTTCTTTAGATGCCAAAAGTCTGATTAGCCGGCTTCTGGTGAAGGACTCCTTACGTAGGCTCTCTCTTCAGAAGATAATGGAACATCCTTGGATAGTCAAGAATGCAGATTTTTCGGCTTGA 843 0.4152 MASQNPAEEENSKQNWSLQDFEIGKPLGRGKFGRVYVAREVKSNFVVALKIIFKEQIDKYKIHHQLRREMEIQTSLRHPNILRLYGWFHDTDRVFLILEYAHKGEVYKEMRKKGHFTEKQAATYILSLTKALTYCHEKHVIHRDIKPENLLLDHEGRLKIGDFGWSVQSKSKRHTMCGTLDYLAPEMVENKAHDYAVDNWTLGILCYEFLFGAPPFEAESQADTFKRIMKVDLSFPSNPSVSLDAKSLISRLLVKDSLRRLSLQKIMEHPWIVKNADFSA* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0621 280 SUPERFAMILY Protein kinase-like (PK-like) 15 275 IPR011009 -
Vra8g0621 280 SMART serkin_6 21 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0621 280 Gene3D Phosphorylase Kinase; domain 1 9 104 - -
Vra8g0621 280 ProSitePatterns Protein kinases ATP-binding region signature. 27 54 IPR017441 GO:0005524
Vra8g0621 280 Gene3D Transferase(Phosphotransferase) domain 1 105 279 - -
Vra8g0621 280 Pfam Protein kinase domain 21 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0621 280 PIRSF ILK 1 271 - -
Vra8g0621 280 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Vra8g0621 280 CDD STKc_Aurora 20 273 - -
Vra8g0621 280 ProSiteProfiles Protein kinase domain profile. 21 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0621 280 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 5 277 IPR030616 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0621 Vra-Chr8 9923378 9929975 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0621 8 277 CBL-interacting serine-threonine protein kinases AT5G25110 38.406 2.00e-61 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Vra8g0621 Pkinase 3.2e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0621 K08850 - gmx:100800111 535.413