Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0581 ATGGCTGGAGTGAGGGAACAAGATCAGTACATGCCAATTGCAAATGTGTTAAGGATCATGCGAAAGATCTTACCAGCGCATGCAAAGATCTCCGATGAAGCTAAGGAGACCATCCAAGAATGTGTGTCGGAGTACATTAGTTTCATCACTGCTGAAGCTAATGACCGATGTCAGCGCGAACAACGTAAGACTGTAACTGCTGAAGATGTTCTGTGGGCTATGGGAAAACTTGGTTTTGATGACTATGCTCAGTCTCTTTCCATTTACCTGAATCGTTATCGCCAAAGTGAAGGAGACCGTATGTCTGTGAGACGTGCTCCTACTTGTGTTCCTCCAATGGAGATGAACCCACCTTATCAACCTTATCCTCCTCATGGTTTTGGAATGTTTGACTATGAGCCATCACACTCCATAGCTTCTTCTTCAAGATCAGGTGGATTTGTTCCAAACATTGATCCTTATCTTAATCCAAAACCTAATGATGATTTTGATCCTTTTGCCAACCCAAAACCTGCTGATGATAATAATAATATGTGA 537 0.4227 MAGVREQDQYMPIANVLRIMRKILPAHAKISDEAKETIQECVSEYISFITAEANDRCQREQRKTVTAEDVLWAMGKLGFDDYAQSLSIYLNRYRQSEGDRMSVRRAPTCVPPMEMNPPYQPYPPHGFGMFDYEPSHSIASSSRSGGFVPNIDPYLNPKPNDDFDPFANPKPADDNNNM* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0581 178 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 4 124 - -
Vra8g0581 178 SUPERFAMILY Histone-fold 7 104 IPR009072 GO:0046982
Vra8g0581 178 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 11 74 IPR003958 -
Vra8g0581 178 Gene3D Histone, subunit A 2 108 IPR009072 GO:0046982
Vra8g0581 178 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 124 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vra8g0581 178 MobiDBLite consensus disorder prediction 138 178 - -
Vra8g0581 178 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Vra8g0581 178 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Vra8g0581 178 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0581 Vra-Chr8 8968241 8969214 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0581 4 100 CCAAT-HAP3 Transcription Factor Family AT5G47670 80.412 4.31e-56 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vra8g0581 CBFD_NFYB_HMF 9.9e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0581 K08065 - gmx:100811633 225.713