Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0565 ATGGGTTCTCACCAACACGAACCATGGCTACTGGAGAACGGAAACCCGAAGGTGTTGACAAGGGAAATGAGACATGGTCGCACTGCGCACAGCAAGTCTTCCAACTCACTTCGCACGAAGTCTGATCGCACTCTTGTTTCTAAGGTTCCCTGTGCCACTATCAGAAACGTACTTTTCAACTTGCAAGAGGTTATCCTTGGCACCAAGCTTTCCATTCTCATCCCTGCCATTCCTGTTGCCATTGTTGCTGAGTACTGTGGCTTTGGAAGACCTTGGGTTTTCGTGTTGAGCTTGCTTGGACTTACCCCACTTGCTGAACGTGTGAGCTTCATCACTGAACAAGTTGCCTTCTACACTGGTCCTACAGTTGGAGGACTTCTGAACGCGACGTGTGGGAATGTTACGGAGCTCATAATAGCAATATTTGCGCTTAGCAGTAACAAGATTGCTGTGGTCAAGTATTCTCTGTTGGGTTCTATTCTTTCCAACCTTCTTCTGGTTCTTGGCACCTCTCTATTATGTGGCGGCATTGCAAACGTTGGATTGGAACAAAAATATGATAGAAGACAAGGAGATGTGAACTCACTTATGCTGCTGTTGGCATTGTTGTGCTACTTACTTCCAATGCTGTTCAAATATAGCGCTGCCTCAGCTGCTCTCACTGTTGATCCTTCACTCCACTTGTCTAGAGCTTCTAGCATTGTGATGCTGATTGCATATGTTGTTTACATAATCTTTCAACTGTGGACACACAGGCAGCTATTTGAAGCTGAAGATGAGGATGAAGATGACAACAATGGTTCAGATGAACAAGCCGTCATTGGACTCTGGAGTGGCATTGCTTGGCTGATTGGGATGACTGTGTTCATTGCTCTGTTGTCTGAATATGTGGTGGATACAATTGAGGATGCATCAGATTCATGGGGTTTGTCTGTGAGCTTCCTCAGCATAATCTTGCTACCAATAGTTGGCAATGCCGCTGAACATGCAGGAGCAGTCATATTTGCTTTCAAGAACAAGCTGGACATCTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTGTGGTCCCTTTGTGTGTGATCGTTGCTTGGACAATGGGTGTCAAAATGGATTTGAACTTCAACATCCTAGAGACAGGTTCCGTTGCTTTGGCAATAATAGTCACAAGCTTCACTTTACAGGATGGTACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTGTGCTACATAGTTATTGGAGCTTGCTTCTTCGTACAAAGAACACCATTGAACCAAGCTGATGTTACAAACATCATTCCTAATGGAGTTTTAAGTGCTTAG 1335 0.4479 MGSHQHEPWLLENGNPKVLTREMRHGRTAHSKSSNSLRTKSDRTLVSKVPCATIRNVLFNLQEVILGTKLSILIPAIPVAIVAEYCGFGRPWVFVLSLLGLTPLAERVSFITEQVAFYTGPTVGGLLNATCGNVTELIIAIFALSSNKIAVVKYSLLGSILSNLLLVLGTSLLCGGIANVGLEQKYDRRQGDVNSLMLLLALLCYLLPMLFKYSAASAALTVDPSLHLSRASSIVMLIAYVVYIIFQLWTHRQLFEAEDEDEDDNNGSDEQAVIGLWSGIAWLIGMTVFIALLSEYVVDTIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAVIFAFKNKLDISLGVALGSATQIAMFVVPLCVIVAWTMGVKMDLNFNILETGSVALAIIVTSFTLQDGTSHYMKGLVLLLCYIVIGACFFVQRTPLNQADVTNIIPNGVLSA* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0565 444 TIGRFAM cax: calcium/proton exchanger 73 422 IPR004798 GO:0006816|GO:0015369
Vra8g0565 444 Pfam Sodium/calcium exchanger protein 280 417 IPR004837 GO:0016021|GO:0055085
Vra8g0565 444 Pfam Sodium/calcium exchanger protein 92 249 IPR004837 GO:0016021|GO:0055085
Vra8g0565 444 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 2 434 - -
Vra8g0565 444 Gene3D - 272 422 IPR044880 -
Vra8g0565 444 Gene3D - 121 271 IPR044880 -
Vra8g0565 444 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 2 434 IPR004713 GO:0006812|GO:0008324|GO:0016021
Vra8g0565 444 TIGRFAM caca2: calcium/proton exchanger 56 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0565 Vra-Chr8 8575551 8578914 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0565 7 430 Antiporters AT2G38170 69.284 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0565 K07300 - gmx:100779440 724.546