Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0561 ATGGCATATTCAGAAATGGCAAAGGAGAACGGTTCGTCGAACTCAAAGCCAACGAGAGACACCAAGGGAAAGATCATCACTTGCAAAGCTGCGGTGGCTTATGGTCCCGGAGAACCCTTCGTGGTGGAGGAAATTCTTGTTCATCCTCCTCAGAAATTTGAGGTTCGAGTCAAAATTCTTTACACTTCCATTTGCCACACCGATCTCAGCGCATGGCGAGGCGAGAACGAGTCTCAGCGCGCCTACCCTCGTATCTTAGGCCACGAAGCATCCGGAATTGTGGAGAGTGTGGGGGAAGGGGTGAGTGAGGTGGAGGAAGGGGACACAGTGGTGCCAATATTCAATGGTGAGTGTGGAGAGTGTTGTTATTGCAAGTGTGAGAAGAGCAACATGTGTGAGAGGTATGGGGTGAACCCCATGAAGAAGGTGATGGAAGGAGATGGCAGAAGCAGATTCTCAACAGTTGATGGAAAACCCATCTTCCATTTCTTGAACACTTCCACATTCTCCGAGTACACGGTGGTGGATTCCGCCTGCGTCGTCAAGTTTCGTCACTCCGATCACACTCTCACCACCAAAAACCTCACCTTGCTCAGCTGTGGCGTCTCCACAGGTGTTGGAGCTGCTTGGAATTGTGCCAATGTGCATTCTGGTTCATCAGTGGCTGTTTTTGGTCTTGGAGCTGTTGGGTTAGCTGTTGCAGAAGGCGCACGAGCCAGAGGTGCTTCCAGAATAATAGGTGTCGACATCAACCCTGATAAATTCATCATAGCCAAAGCAATGGGAGTCACTGATTTCATAAACCCAAAGGATGAAGAGAAGCCATTATACGAGAGAATAAGAAAAATGACTGATGGAGGTGTAGACTACAGTTTTGAATGTACTGGAAACGTGGATGTTCTAAGGGGTGCATTTTTGTCTGCTCATGCGGGTTGGGGATTGACTGTGATATTGGGAATTCATGCATCACCAAGCTTGCTTCCTATCCACCCGATGGAGCTCTTTGATGGCCGCAGTATCATTGGATCAGTATTTGGAGGTTTCAAAGGGAAAAGTCAGTTGCCTCATTTTGCCACACAATGTGGAAATGGAGTTATGAAGTTGGATAATTTCATCACTCACGAGCTACCCATTGAGGAGATAGACAAAGCCTTCGATCTTTTGATCACAGGGAAATCACTGAGATGTCTTCTGCATTTCTAA 1203 0.4738 MAYSEMAKENGSSNSKPTRDTKGKIITCKAAVAYGPGEPFVVEEILVHPPQKFEVRVKILYTSICHTDLSAWRGENESQRAYPRILGHEASGIVESVGEGVSEVEEGDTVVPIFNGECGECCYCKCEKSNMCERYGVNPMKKVMEGDGRSRFSTVDGKPIFHFLNTSTFSEYTVVDSACVVKFRHSDHTLTTKNLTLLSCGVSTGVGAAWNCANVHSGSSVAVFGLGAVGLAVAEGARARGASRIIGVDINPDKFIIAKAMGVTDFINPKDEEKPLYERIRKMTDGGVDYSFECTGNVDVLRGAFLSAHAGWGLTVILGIHASPSLLPIHPMELFDGRSIIGSVFGGFKGKSQLPHFATQCGNGVMKLDNFITHELPIEEIDKAFDLLITGKSLRCLLHF* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0561 400 PANTHER ALCOHOL DEHYDROGENASE-LIKE 3 21 399 - -
Vra8g0561 400 Pfam Zinc-binding dehydrogenase 228 347 IPR013149 -
Vra8g0561 400 SUPERFAMILY GroES-like 21 224 IPR011032 -
Vra8g0561 400 SUPERFAMILY GroES-like 350 400 IPR011032 -
Vra8g0561 400 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 194 360 IPR036291 -
Vra8g0561 400 MobiDBLite consensus disorder prediction 7 21 - -
Vra8g0561 400 MobiDBLite consensus disorder prediction 1 21 - -
Vra8g0561 400 Pfam Alcohol dehydrogenase GroES-like domain 54 181 IPR013154 -
Vra8g0561 400 Gene3D - 205 343 - -
Vra8g0561 400 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 87 101 IPR002328 GO:0008270|GO:0016491
Vra8g0561 400 Gene3D - 31 395 - -
Vra8g0561 400 PANTHER ALCOHOL DEHYDROGENASE 21 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0561 Vra-Chr8 8523868 8533470 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0561 54 342 Monolignol Biosynthesis Gene Families AT4G39330 24.752 1.22e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0561 K00001 - gmx:100815166 628.632