Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0558 ATGGGGTTTGGTCTGAAAAGGAGGAAGAAGAGAGGAGAAGCAGAGGAAGAAGGAAGGATGGGCAAGTCTTTCAAGGATTCACTCAAAGCTCTTGAAGCTGACATCCAGTTTGCCAACACACTAGCTTCTGAGTATTCAAGTGGAGGTGCCAGCTTCCAAATGAGATTGTCCTACAGCCCAGCTGCTCAATTCTTCCTTTTTCTTGTTCAGTGGACTGACTGTCACCTTGCTGGAGCCTTAGGATTGCTCAGAATTCTAATATATAAGGCTTATGAAGATGGAAAGACAACCATATCCATTTACGAAAGAAAAGCCAGTCTAAAGGAATTCTATGGTGTGGTGTTTCCCTCTTTATTGCAACTTCACAGAGGAATCACTGATGTTGAAGACCGAAAACAAAAACATCTATTTGCTACTAAGTATAAGCTTAAAGATTTGACAAACAAAGGAAAGTTTTCTGAAACTGACATTGAGAGAGAAGAAGAGTGTGGTATTTGCTTGGAGATGAATAGCATGGTTGTATTGCCCAACTGCTATCATTCAATGTGTATGGAATGCTACCAAGACTGGCATGCAAGATCTCAATCTTGTCCTTTCTGTCGAGACAGTCTCAAAAGAGTAAACTCTGATGATCTTTGGATCTACATTAGCAGCAGTGAGATCAATGACTTGGCTTCAATCAACAAGGAGAATTTGAAAAGATTGTTCATGTACATAGAAAGTTTGCCTCTAATTGCCAGATCCTACATTCACCATCTCATATCATCACCACTAGTGATTGCCAATTAG 789 0.403 MGFGLKRRKKRGEAEEEGRMGKSFKDSLKALEADIQFANTLASEYSSGGASFQMRLSYSPAAQFFLFLVQWTDCHLAGALGLLRILIYKAYEDGKTTISIYERKASLKEFYGVVFPSLLQLHRGITDVEDRKQKHLFATKYKLKDLTNKGKFSETDIEREEECGICLEMNSMVVLPNCYHSMCMECYQDWHARSQSCPFCRDSLKRVNSDDLWIYISSSEINDLASINKENLKRLFMYIESLPLIARSYIHHLISSPLVIAN* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0558 262 ProSiteProfiles Zinc finger RING-type profile. 163 201 IPR001841 -
Vra8g0558 262 MobiDBLite consensus disorder prediction 1 20 - -
Vra8g0558 262 PANTHER RING FINGER PROTEIN 41, 151 12 262 - -
Vra8g0558 262 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 12 262 - -
Vra8g0558 262 Pfam Zinc finger, C3HC4 type (RING finger) 160 206 - -
Vra8g0558 262 ProSitePatterns Zinc finger RING-type signature. 178 187 IPR017907 -
Vra8g0558 262 SUPERFAMILY RING/U-box 151 206 - -
Vra8g0558 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 211 IPR013083 -
Vra8g0558 262 SMART ring_2 163 200 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0558 Vra-Chr8 8455844 8459475 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0558 107 208 C3H Transcription Factor Family AT5G01960 28.972 1.01e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0558 K25840 - gmx:100814293 449.514