Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0548 ATGAATCATCCTTGTGCAAGCTCTAGAAACCTGTTGTCACAAATCCTGAATAGATATCTTCTAGTATGGATGATCTTAATGAAGGAATCGGCAATTGCTGCAACTCCAGCAGGAAATGAAACTGATTTACAAGCTTTACTTGACTTCAAGAATAGGGTAGTAGCAGATCCATTCAACATTATGAGTTCTTGGAATGACTCCCTCCATCACTGCAATTGGATAGGAATCACATGCAACATCTCCAATGGAAGGGTCATGGACCTTAGCCTTGAGCAACTGAGACTAGGAGGCACTCTCACACCATTCATAGGAAACCTCACATTCCTCAACACACTCAACTTGTTAAACAATAGCTTCCATGGTGAAATTCCTCAAGAGGTGGGTCGTTTACTCTATCTGGAACATCTAAACCTCAGCTTAAATAACTTTGGTGAGAGTATTCCAAGTAATCTAAGTCACTGCACAAAACTAGAAGTACTAGGTGTAGGAGGAAATAATCTTACAGGAGTAATCCCAACTTGGATTGGAAACCTTTCTTCTTTATCTCGCATTAGCTTTGGATTAAATAACTTGATCGGAAGCATACCACAAGAGATGGGCCTTTTATCAAGCTTGACATATCTTGTGCTATATGGGAATTACTTGTCTGGCTCAGTTCCTTCTTCAATCTATAACAAATCTTCCTTATACTATTTCACTTTTACTCAAAACCATCTTCATGGGAACTTACCGGCCGATGTTGGGTTTACTCTTCCAAACATTCAAGTATTTGCTGGTGCGGTCAACAATCTTACAGGTTCTGTCCCTGTATCATTGTTGAATGCATCAAAACTAGAGATTCTTGACTTCTCCGTGAATGGTCTCACTGGAACACTGCCAAAGAACTTAGGGGTCTTGAACAGGTTAACTAGACTTAGCTTTGAACACAACAGACTGGGAACTGGGAAAACAGATGATCTTAGCTTTCTTGATTCTTTGGTCAACTGCACAGGTCTACAAGTTTTACGTCTAGGAGTAAATAATTTTGGTGGAGTATTGCCTAAATCAATTGCTAATTTCTCAAGCCAAATGCACACATTTGCCCTTGGAAATATACCTGGAATTGGAGACGGAATACATGGAAATATACCTGTTGGAATTGGCAATCTTGCAAACCTGGCCCTCATAAGTTTGGAAGGAAACCATCTAACTGGTAGTCTTCCACATACATTGGGTAGGCTGAAAAATCTGAGAGAATTGTATCTGAATGTCAACAAATTTTCAGGTAGAATCCCATCCTCCTTGGGAAATTTGTCTGTATTAACGAAAATTTTTCTGGAGGAGAACGACTTCGAGGGAAGCATCCCTTCTAGTCTTGGAAACTGCCAAAATTTATTGGTACTCAGCCTTTATAGCAACAAGCTCAGTGGCACCATACCACCTGAAGTTATTGGCCTTTCTTCACTAGCAATTTATTTAGATGTATCTCATAATGCTTTGTCAGGGACTCTTCCAGCTGAAGTGAGTAAGCTACAAAACCTTGGAGAGTTGGTGCTGTCTGAGAACAACTTTTCTGGAGCCATTCCATCTTCTCTTGGCAGATGCATTAGCTTGGAAAAGCTGCACTTGGAGGGAAATTCTTTTGATGGAAACATTCCTCAAACTTTAAAGAATTTGAGAGGTTTACTTGACATAGATCTTTCACGAAATAACTTGTCTGGCAAGATTCCCGAGTTTCTTGGGGAGTTCACTGAGCTCAAGCATTTAAATCTTTCATACAATAATTTTGAAGGTGAAATACCAAAGAACGGAATATTCAAAAATGCTACATCCCTTTCATTGTATGGCAACAGCAAGCTATGTGGGGGCGTTCCAGAACTAAATTTCCCTCCATGCACTGTCAGGAAAGCTTCTTTGGCAAGAAGACTCCTTGCTCCTAAGGTGGCTATCCCTATTTCATGTGCCCTTGTATTACTGTTAATTCTATCATGTTTTCTTATATTGTTCCCCATAGTAAAAAGATCAAAGAAGAAAATTCCTTCATCAACTACTGAACGGGGTTTGGAATTTGAAATTTCTTACTCAGAAATTAACAAGTGCACTGGTGGGTTCTCCCCGGATAACCTGATTGGTTCGGGAAGTTTTGGTTCTGTATATAAAGGAACTCTGTCAGGTGATAAATCATGTGTTGCAGTTAAAGTATTAAACCTTCAACAGAAAGGAGCCCCTGAGAGTTTCATTGATGAATGCCATGTTCTGAGAAGTGTAAGGCATCGCAACCTTCTCAAGATCATAACTGCCATCTCAGGAGTTGATCATCAAGGCAATGACTTCAAAGCTCTAGTGTTTGAGTACATGCCTAATGGAAGTCTAGAAGATTGGTTGCATCCTATAAGAAATTTGCAATTTCAGAAGAAGACATTGACATTCACTCAAAGACTGAACATAGCAATTGATGTTTCATGTGCACTGGAATACCTCCACCACTTCTGTGAAACTCCAATTGTTCATTGTGACATAAAGCCAAGTAACGTGCTTCTTGACAATGATATGGTTGCCCGTCTTGGTGACTTTGGATTAGCTACATTTCTGTATGAAGAATCAAGCAAGTTATCCACACAACCGGTTATGTCAGATAACCTAAGGGGTTCTATTGGCTACATCCCTCCAGAGTATGGTATGGGTGGGAAGCCTTCCACACTTGGAGATATATACAGCTATGGGATACTGTTACTGGAAATTTTCACTGGAAAAAGGCCGACAGATGAAGCATTTGAAGGTGGCACGGGAATTCAGCAGTTTGTAGCAAATGCTCTATCTAACAATGTCATGGATATCGTTGATCCTTCATTAGTTTGTGAACAAGACTTTGATGAGGAAAGTGAAGAGTCTGAGTGTGAAGAGAAAGCTATAAGGAGGAACAACGAGATTAAAGGAATGGCTAAAGGTTCGATTGAGGATTGCTTTGTGTCTCTGATGCAAATTGGAATGTCGTGCTCTACAAATGCACCTGATGAACGAATGCCAATCACTGTGGTCTTCAACAAGCTGCATACTATCAGGAACGTTTATAAAGATAAAGCATAG 3066 0.4002 MNHPCASSRNLLSQILNRYLLVWMILMKESAIAATPAGNETDLQALLDFKNRVVADPFNIMSSWNDSLHHCNWIGITCNISNGRVMDLSLEQLRLGGTLTPFIGNLTFLNTLNLLNNSFHGEIPQEVGRLLYLEHLNLSLNNFGESIPSNLSHCTKLEVLGVGGNNLTGVIPTWIGNLSSLSRISFGLNNLIGSIPQEMGLLSSLTYLVLYGNYLSGSVPSSIYNKSSLYYFTFTQNHLHGNLPADVGFTLPNIQVFAGAVNNLTGSVPVSLLNASKLEILDFSVNGLTGTLPKNLGVLNRLTRLSFEHNRLGTGKTDDLSFLDSLVNCTGLQVLRLGVNNFGGVLPKSIANFSSQMHTFALGNIPGIGDGIHGNIPVGIGNLANLALISLEGNHLTGSLPHTLGRLKNLRELYLNVNKFSGRIPSSLGNLSVLTKIFLEENDFEGSIPSSLGNCQNLLVLSLYSNKLSGTIPPEVIGLSSLAIYLDVSHNALSGTLPAEVSKLQNLGELVLSENNFSGAIPSSLGRCISLEKLHLEGNSFDGNIPQTLKNLRGLLDIDLSRNNLSGKIPEFLGEFTELKHLNLSYNNFEGEIPKNGIFKNATSLSLYGNSKLCGGVPELNFPPCTVRKASLARRLLAPKVAIPISCALVLLLILSCFLILFPIVKRSKKKIPSSTTERGLEFEISYSEINKCTGGFSPDNLIGSGSFGSVYKGTLSGDKSCVAVKVLNLQQKGAPESFIDECHVLRSVRHRNLLKIITAISGVDHQGNDFKALVFEYMPNGSLEDWLHPIRNLQFQKKTLTFTQRLNIAIDVSCALEYLHHFCETPIVHCDIKPSNVLLDNDMVARLGDFGLATFLYEESSKLSTQPVMSDNLRGSIGYIPPEYGMGGKPSTLGDIYSYGILLLEIFTGKRPTDEAFEGGTGIQQFVANALSNNVMDIVDPSLVCEQDFDEESEESECEEKAIRRNNEIKGMAKGSIEDCFVSLMQIGMSCSTNAPDERMPITVVFNKLHTIRNVYKDKA* 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0548 1021 SMART serkin_6 697 1014 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0548 1021 SUPERFAMILY Protein kinase-like (PK-like) 671 1007 IPR011009 -
Vra8g0548 1021 SMART LRR_typ_2 202 226 IPR003591 -
Vra8g0548 1021 SMART LRR_typ_2 383 406 IPR003591 -
Vra8g0548 1021 SMART LRR_typ_2 407 431 IPR003591 -
Vra8g0548 1021 SMART LRR_typ_2 130 154 IPR003591 -
Vra8g0548 1021 SMART LRR_typ_2 504 528 IPR003591 -
Vra8g0548 1021 SMART LRR_typ_2 576 601 IPR003591 -
Vra8g0548 1021 Gene3D Ribonuclease Inhibitor 319 625 IPR032675 -
Vra8g0548 1021 ProSitePatterns Protein kinases ATP-binding region signature. 703 726 IPR017441 GO:0005524
Vra8g0548 1021 Gene3D Transferase(Phosphotransferase) domain 1 779 1021 - -
Vra8g0548 1021 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 36 1015 - -
Vra8g0548 1021 Pfam Leucine Rich Repeat 409 431 IPR001611 GO:0005515
Vra8g0548 1021 SUPERFAMILY L domain-like 39 312 - -
Vra8g0548 1021 ProSiteProfiles Protein kinase domain profile. 697 1014 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0548 1021 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATED 36 1015 - -
Vra8g0548 1021 Pfam Protein kinase domain 700 918 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0548 1021 Pfam Leucine rich repeat 156 215 IPR001611 GO:0005515
Vra8g0548 1021 Pfam Leucine rich repeat 530 589 IPR001611 GO:0005515
Vra8g0548 1021 ProSitePatterns Serine/Threonine protein kinases active-site signature. 828 840 IPR008271 GO:0004672|GO:0006468
Vra8g0548 1021 Pfam Leucine rich repeat N-terminal domain 40 79 IPR013210 -
Vra8g0548 1021 SUPERFAMILY L domain-like 371 615 - -
Vra8g0548 1021 Gene3D Phosphorylase Kinase; domain 1 679 778 - -
Vra8g0548 1021 Gene3D Ribonuclease Inhibitor 99 318 IPR032675 -
Vra8g0548 1021 Gene3D Ribonuclease Inhibitor 36 98 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0548 Vra-Chr8 8309743 8313647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0548 39 1017 Receptor kinase-like Gene Family AT3G47570 43.620 0.0 787
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vra8g0548 Pkinase 2.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0548 - - gmx:106794146 1598.18